Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004885.1 Kokia drynarioides strain JFW-HI SEQ_118566, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4472
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32


Found at i:2236 original size:15 final size:15

Alignment explanation


    Indices: 2216--2244  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

       2206 TTTCGTTTAA

                           
       2216 TTATTTATTTTTATG
          1 TTATTTATTTTTATG

                          
       2231 TTATTTATTTTTAT
          1 TTATTTATTTTTAT

       2245 TTTTCAAAAT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76


Consensus pattern (15 bp):   
TTATTTATTTTTATG

Found at i:2787 original size:16 final size:15

Alignment explanation


    Indices: 2760--2814  Score: 56
    Period size: 16  Copynumber: 3.5  Consensus size: 15

       2750 AAAAAAATTT

                 *         
       2760 ATTTTCTAATTTTTA
          1 ATTTTTTAATTTTTA

                             
       2775 ATTTATTTAATTTATTA
          1 ATTT-TTTAATTT-TTA

             *         *   
       2792 ACTTTTTAATTGTTA
          1 ATTTTTTAATTTTTA

              *     
       2807 ATATTTTA
          1 ATTTTTTA

       2815 TACTAATTAA


Statistics
Matches: 33,  Mismatches: 5, Indels: 4
        0.79            0.12        0.10

Matches are distributed among these distances:
  15   13  0.39
  16   14  0.42
  17    6  0.18

ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64


Consensus pattern (15 bp):   
ATTTTTTAATTTTTA

Found at i:4341 original size:18 final size:18

Alignment explanation


    Indices: 4318--4352  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       4308 TACAGTATTT

                   *          
       4318 ATTCTCTTTTATTTTTAC
          1 ATTCTCTATTATTTTTAC

                      *      
       4336 ATTCTCTATTGTTTTTA
          1 ATTCTCTATTATTTTTA

       4353 ACAATGGGGA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.17, C:0.14, G:0.03, T:0.66


Consensus pattern (18 bp):   
ATTCTCTATTATTTTTAC
Done.