Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004888.1 Kokia drynarioides strain JFW-HI SEQ_118571, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1958
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:498 original size:15 final size:17

Alignment explanation


    Indices: 468--502  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        458 AGTTTATCAA

                             
        468 ATAAAAAAATATTAAAT
          1 ATAAAAAAATATTAAAT

                        *    
        485 ATAAAAAAA-ATAAAAT
          1 ATAAAAAAATATTAAAT

              
        501 AT
          1 AT

        503 GACGTATATA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    8  0.47
  17    9  0.53

ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26


Consensus pattern (17 bp):   
ATAAAAAAATATTAAAT
Done.