Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004891.1 Kokia drynarioides strain JFW-HI SEQ_118578, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 735

Length: 1226
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.40


Found at i:1168 original size:93 final size:89

Alignment explanation


    Indices: 1052--1226  Score: 217
    Period size: 90  Copynumber: 1.9  Consensus size: 89

       1042 TAAAAAGTCT

                       *                      *      *    **     *           
       1052 TCAAATTTTTTTAAAGAAGCAATTAAGTCTCCATTCTTTTTTTTTTTCACTCACTTGAATACTTG
          1 TCAAATTTTTTAAAAGAAGCAATTAAG-CTCC-TGC-TTTTATTTTGAACTCAATTGAATACTTG

                                       
       1117 AACTTTCAAAATACATCAAAAAGACCC
         63 AACTTTCAAAATACATCAAAAAGACCC

                                                                    **       
       1144 TCAAATTTTTTCGAAAAG-AGCAATTAAGCTCCTGCTTTTATTTTGAACTCAATTGGGTACTTGA
          1 TCAAATTTTTT--AAAAGAAGCAATTAAGCTCCTGCTTTTATTTTGAACTCAATTGAATACTTGA

                       *       
       1208 ACTTTCAAAATGCATCAAA
         64 ACTTTCAAAATACATCAAA


Statistics
Matches: 72,  Mismatches: 9, Indels: 6
        0.83            0.10        0.07

Matches are distributed among these distances:
  90   41  0.57
  91    2  0.03
  92   15  0.21
  93   10  0.14
  94    4  0.06

ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38


Consensus pattern (89 bp):   
TCAAATTTTTTAAAAGAAGCAATTAAGCTCCTGCTTTTATTTTGAACTCAATTGAATACTTGAAC
TTTCAAAATACATCAAAAAGACCC
Done.