Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004900.1 Kokia drynarioides strain JFW-HI SEQ_118591, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3098
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31


Found at i:1067 original size:43 final size:43

Alignment explanation


    Indices: 967--1509  Score: 414
    Period size: 43  Copynumber: 12.7  Consensus size: 43

        957 ACCATACTAG

                             *          *    *    *     
        967 CACATAAGTGCATCATCAGATAAACCGACGCAATTATATTGGCA
          1 CACA-AAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

              **                   *        *  *        
       1011 C-GTAAGTGCATCATCGGATAAATCGAAGCAACTACA-TGGCCA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGG-CA

                *          **      *               *   
       1053 CACACAGTGCATCATTTGATAAAACGAAGCAAATATACTAGCA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                * *                **              **  
       1096 CACACATTGCATCATCGGATAAATTGAAGCAAATATACTAACA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

            * * * * *       * *    *                   
       1139 TATACACTACATCATCAGCTAAATCGAAGCAAATATACTGGCA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                  * *      *                 *     **  
       1182 CACAAAATTCATCATTGGATAAACCGAA--AAAAATACTCACA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                       *    **     * *                  
       1223 CACAAAGTGCACCATCAAATAAAACAAAG-AAACTATACTGGCA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAA-TATACTGGCA

                                 *      *        *  ** 
       1266 CACAAAGTGCATCATCGGATATACCGAAACAAATATATTGAAA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                *           *       *            *   * 
       1309 CACATAGTGCATCATCCGATAAACTGAAGCAAATATATTGGAA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                                     *      *      * * 
       1352 CACAAAGTGCATCATCGGATAAACCAAAGCAATTATACTAGAA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                *   *       ** *   * *   *       *     
       1395 CACACAGTACATCATCAAAGAAATCAAAGAAAATATATTGGCA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                    *       *       *       *          
       1438 CACAAAGTACATCATCAGATAAACTGAAGCAACTATACTGGCA
          1 CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

                                          
       1481 CACACAA-TGCATCATCGGATAAACCGAAG
          1 CACA-AAGTGCATCATCGGATAAACCGAAG

       1510 GATCACTTGT


Statistics
Matches: 392,  Mismatches: 100, Indels: 15
        0.77            0.20        0.03

Matches are distributed among these distances:
  41   33  0.08
  42   34  0.09
  43  317  0.81
  44    8  0.02

ACGTcount: A:0.45, C:0.22, G:0.14, T:0.20


Consensus pattern (43 bp):   
CACAAAGTGCATCATCGGATAAACCGAAGCAAATATACTGGCA

Done.