genome.fa.s4905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004905.1 Kokia drynarioides strain JFW-HI SEQ_118598, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169261

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1483--1539	31	1.9	28	86	10	78	3	29	1	64	1.20
1514--1562	20	2.4	20	82	3	62	6	22	0	71	1.08
9467--9527	18	3.2	19	78	19	65	52	4	39	3	1.39
10022--10154	70	1.9	67	84	4	176	32	12	12	43	1.78
14883--14921	20	2.0	20	84	0	51	48	0	38	12	1.42
14981--15037	30	1.9	29	89	3	87	45	15	3	35	1.64
24138--24206	17	4.1	17	75	0	66	44	11	23	20	1.83
29789--30007	20	11.0	19	86	3	186	35	32	19	12	1.89
29803--30007	40	5.1	40	86	0	248	35	32	19	13	1.90
29803--30007	60	3.4	60	83	2	259	35	32	19	13	1.90
47225--47265	17	2.3	18	87	4	66	39	0	7	53	1.29
47691--47730	19	2.1	19	90	0	62	42	20	5	32	1.73
48652--48934	138	2.1	138	93	0	485	39	5	6	47	1.53
51179--51228	8	6.1	8	76	19	50	46	16	2	36	1.58
51179--51228	25	2.0	24	88	11	75	46	16	2	36	1.58
52006--52071	26	2.5	26	90	0	105	27	24	22	25	2.00
54229--54260	17	1.9	16	93	6	55	43	25	0	31	1.55
54449--54555	48	2.2	49	81	6	121	39	22	8	29	1.83
55049--55095	16	3.0	16	84	3	51	78	12	0	8	0.95
55608--55649	23	1.9	22	81	18	52	76	4	9	9	1.15
56631--56657	2	13.5	2	100	0	54	48	0	0	51	1.00
61373--61444	37	1.9	37	91	0	117	26	23	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61553--61606	26	2.1	26	85	0	72	25	14	24	35	1.94
65347--65379	11	3.2	11	87	12	52	78	0	21	0	0.75
65345--65374	5	5.8	5	92	7	51	80	0	20	0	0.72
75578--75997	198	2.1	197	86	1	581	34	15	10	39	1.81
85160--85221	28	2.2	27	88	11	90	20	16	6	56	1.62
85617--85649	7	4.7	7	96	0	57	12	3	0	84	0.72
107549--107578	12	2.5	12	94	0	51	50	3	33	13	1.58
120781--120805	13	1.9	13	100	0	50	68	0	0	32	0.90
122486--122576	43	2.1	43	83	4	112	29	30	20	18	1.97
123060--123110	27	1.9	26	88	4	75	13	17	19	49	1.80
137777--137813	16	2.1	18	85	14	51	18	5	10	64	1.43
139758--139813	17	3.3	17	69	0	58	16	16	16	51	1.76
139752--139832	34	2.4	34	100	0	162	17	17	14	50	1.78
139767--139822	17	3.3	17	69	0	58	17	17	16	48	1.82
139775--139830	17	3.3	17	69	0	58	19	19	14	46	1.84
141878--142044	85	2.0	85	97	0	316	26	15	27	30	1.96
146252--146294	21	2.0	21	100	0	86	41	20	9	27	1.83
167043--167073	13	2.4	13	94	0	53	41	0	58	0	0.98
167115--167199	9	9.1	9	76	23	79	45	0	0	54	1.00
167145--167198	28	2.0	27	96	3	99	46	0	0	53	1.00
167115--167199	38	2.3	37	91	6	136	45	0	0	54	1.00
167348--167434	30	2.8	31	78	3	104	47	19	24	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167666--167699	18	1.9	18	94	5	61	38	23	17	20	1.93
167667--167706	18	2.3	18	86	4	55	40	27	15	17	1.89
169013--169051	19	2.1	18	95	4	69	17	15	5	61	1.51

Tables:   1

The End!