genome.fa.s4906.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004906.1 Kokia drynarioides strain JFW-HI SEQ_118600, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147077

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168--219	22	2.5	19	84	9	59	73	3	5	17	1.19
2414--2579	28	5.9	28	74	6	140	27	15	5	51	1.64
2414--2576	84	1.9	84	81	4	195	27	14	5	52	1.63
3575--3681	53	2.0	53	98	0	205	28	22	25	24	2.00
6522--6548	8	3.4	8	100	0	54	25	0	25	48	1.52
7816--7845	15	1.9	16	93	6	53	56	0	3	40	1.16
8401--8433	12	2.8	12	100	0	66	33	6	0	60	1.21
20270--20335	18	3.9	18	68	22	52	40	0	1	57	1.08
20445--20491	23	2.0	23	88	8	69	53	0	4	42	1.20
20922--20982	31	2.0	31	90	9	99	26	1	4	67	1.20
21437--21477	14	3.0	14	82	3	57	41	7	4	46	1.53
22569--22596	2	14.0	2	100	0	56	0	50	0	50	1.00
32941--33046	55	2.0	55	94	3	189	19	18	33	27	1.96
34636--34670	18	1.9	18	88	11	54	22	2	5	68	1.24
34663--34687	13	1.9	13	100	0	50	24	0	8	68	1.16
35487--35546	31	1.9	31	82	3	75	46	18	15	20	1.84
42773--42910	44	3.1	44	62	22	108	42	9	23	24	1.84
42772--42948	88	2.0	88	100	0	354	40	9	24	25	1.84
44588--44628	13	2.9	14	77	22	50	53	0	0	46	1.00
46060--46093	15	2.3	15	89	0	50	32	2	20	44	1.67
48280--48308	3	9.7	3	100	0	58	0	65	0	34	0.93
48326--48377	3	17.3	3	100	0	104	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48326--48390	9	6.8	11	94	3	51	30	0	0	69	0.89
48621--48681	25	2.4	25	75	5	70	70	8	16	4	1.29
63922--63982	19	3.2	19	68	9	61	22	4	6	65	1.36
63918--63996	38	2.0	38	90	4	122	21	7	7	63	1.46
71739--71818	37	2.2	37	100	0	160	36	0	25	38	1.56
76466--76503	17	2.2	17	86	9	51	26	2	0	71	1.00
76625--76666	22	2.0	22	85	4	59	23	2	7	66	1.28
80594--80656	20	3.1	20	80	14	67	26	3	1	68	1.14
80617--80656	11	4.0	10	84	12	55	27	0	2	70	1.01
83740--83897	66	2.4	66	83	2	201	27	18	22	31	1.97
83740--83923	66	2.8	65	80	4	199	28	16	22	31	1.96
94030--94098	34	2.0	34	100	0	138	50	14	11	23	1.75
99998--100037	18	2.2	18	86	8	55	37	0	5	57	1.21
101204--101426	30	7.6	29	78	9	121	39	23	2	34	1.69
101208--101377	60	2.8	60	81	9	179	41	21	2	34	1.66
101208--101426	29	7.5	30	80	10	177	39	23	2	34	1.68
107219--107540	99	3.3	99	82	4	384	33	16	32	17	1.92
107201--107540	50	6.9	50	70	10	232	33	16	32	17	1.92
107791--107888	41	2.4	41	88	5	137	28	17	19	34	1.94
108044--109631	209	7.6	208	82	4	1775	36	17	22	23	1.94
108048--109631	417	3.8	416	82	4	1776	36	17	22	23	1.94
108048--109631	626	2.5	622	83	4	1921	36	17	22	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110003--110088	34	2.6	34	86	1	129	32	2	8	56	1.41
110003--110095	17	5.6	17	78	2	91	34	2	7	55	1.40
110737--110795	29	2.0	29	84	12	77	61	1	5	32	1.28
111873--112223	29	11.9	29	75	9	230	36	25	3	34	1.73
111872--112122	30	8.5	29	76	9	188	37	25	3	33	1.72
111873--112193	60	5.4	59	77	7	242	37	24	3	35	1.71
111873--112217	30	11.7	29	71	14	131	36	24	3	35	1.72
113310--113345	3	12.0	3	93	0	63	63	0	2	33	1.08
114229--114339	51	2.2	51	93	1	186	19	48	10	20	1.79
115456--115495	21	1.9	21	89	0	62	47	0	12	40	1.41
115541--115651	47	2.4	47	90	0	177	32	12	18	36	1.89
140654--141209	30	18.8	29	78	10	427	36	1	26	35	1.65
140654--141209	89	6.3	86	79	8	494	36	1	26	35	1.65
140659--141226	59	9.6	60	78	7	385	36	1	26	35	1.65
140654--141226	119	4.8	120	77	9	516	36	1	26	35	1.65
143525--143654	48	2.8	45	76	14	131	48	8	0	42	1.39
143589--143632	18	2.4	18	81	11	54	50	0	0	50	1.00
143589--143636	21	2.3	20	76	23	55	50	0	0	50	1.00
143843--143891	18	2.9	17	84	6	55	55	12	4	28	1.55
144179--144233	29	1.9	29	85	10	78	43	3	0	52	1.18

Tables:   1

The End!