Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004907.1 Kokia drynarioides strain JFW-HI SEQ_118601, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10909
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32


Found at i:999 original size:36 final size:36

Alignment explanation


    Indices: 959--1033  Score: 150
    Period size: 36  Copynumber: 2.1  Consensus size: 36

        949 CATACAACAC

                                                
        959 TAAGTTAGAAAATGCAAACACTAAATATAAAATGTT
          1 TAAGTTAGAAAATGCAAACACTAAATATAAAATGTT

                                                
        995 TAAGTTAGAAAATGCAAACACTAAATATAAAATGTT
          1 TAAGTTAGAAAATGCAAACACTAAATATAAAATGTT

               
       1031 TAA
          1 TAA

       1034 CATGCATACT


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   39  1.00

ACGTcount: A:0.53, C:0.08, G:0.11, T:0.28


Consensus pattern (36 bp):   
TAAGTTAGAAAATGCAAACACTAAATATAAAATGTT

Found at i:1969 original size:17 final size:18

Alignment explanation


    Indices: 1930--1969  Score: 57
    Period size: 17  Copynumber: 2.3  Consensus size: 18

       1920 ATTATACAAA

                    *         
       1930 TAACAATGGAAATGCAAC
          1 TAACAATGCAAATGCAAC

                              
       1948 T-ACAATGCAAATG-AAC
          1 TAACAATGCAAATGCAAC

                  
       1964 TAACAA
          1 TAACAA

       1970 GTAAAATGCA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  16    4  0.20
  17   15  0.75
  18    1  0.05

ACGTcount: A:0.53, C:0.17, G:0.12, T:0.17


Consensus pattern (18 bp):   
TAACAATGCAAATGCAAC
Done.