Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004914.1 Kokia drynarioides strain JFW-HI SEQ_118610, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1185
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.36


Found at i:920 original size:21 final size:22

Alignment explanation


    Indices: 890--934  Score: 65
    Period size: 21  Copynumber: 2.1  Consensus size: 22

        880 CTATACATAT

                               *  
        890 AACTACCGATAC-TCTCAATTC
          1 AACTACCGATACATCTCAAGTC

                 *                
        911 AACTATCGATACATCTCAAGTC
          1 AACTACCGATACATCTCAAGTC

              
        933 AA
          1 AA

        935 TGAACAACCT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21   11  0.52
  22   10  0.48

ACGTcount: A:0.38, C:0.29, G:0.07, T:0.27


Consensus pattern (22 bp):   
AACTACCGATACATCTCAAGTC

Done.