Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004917.1 Kokia drynarioides strain JFW-HI SEQ_118614, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 821

Length: 1369
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37


Found at i:832 original size:17 final size:17

Alignment explanation


    Indices: 810--844  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        800 AATGTAATCT

                             
        810 TCAAAACAAATAATTTA
          1 TCAAAACAAATAATTTA

                     *       
        827 TCAAAACAAGTAATTTA
          1 TCAAAACAAATAATTTA

             
        844 T
          1 T

        845 AATGATACTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.54, C:0.11, G:0.03, T:0.31


Consensus pattern (17 bp):   
TCAAAACAAATAATTTA
Done.