Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004921.1 Kokia drynarioides strain JFW-HI SEQ_118619, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7352
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33


Found at i:3248 original size:18 final size:19

Alignment explanation


    Indices: 3202--3252  Score: 63
    Period size: 18  Copynumber: 2.8  Consensus size: 19

       3192 TAAAAAAATT

                               
       3202 TAAT-AAATAAAATATATA
          1 TAATAAAATAAAATATATA

                   *            
       3220 TAA-AATTATAAAATAT-TA
          1 TAATAA-AATAAAATATATA

                           
       3238 TAATAAAATAAAATA
          1 TAATAAAATAAAATA

       3253 AAATAAATAT


Statistics
Matches: 28,  Mismatches: 2, Indels: 6
        0.78            0.06        0.17

Matches are distributed among these distances:
  18   17  0.61
  19   11  0.39

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (19 bp):   
TAATAAAATAAAATATATA
Done.