Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004934.1 Kokia drynarioides strain JFW-HI SEQ_118640, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1386
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.32


Found at i:1198 original size:27 final size:27

Alignment explanation


    Indices: 1147--1211  Score: 69
    Period size: 27  Copynumber: 2.4  Consensus size: 27

       1137 ACTGGGTGCC

                 *       *             
       1147 GCCTACCAGATGGGCACCATAGGT-GT
          1 GCCTATCAGATGGACACCATAGGTGGT

                 *            *  *      
       1173 CGCCTGTCAGATGGACACTATTGGTGGT
          1 -GCCTATCAGATGGACACCATAGGTGGT

                       
       1201 GCCTATCAGAT
          1 GCCTATCAGAT

       1212 AACCTTCACC


Statistics
Matches: 31,  Mismatches: 6, Indels: 2
        0.79            0.15        0.05

Matches are distributed among these distances:
  27   29  0.94
  28    2  0.06

ACGTcount: A:0.22, C:0.25, G:0.29, T:0.25


Consensus pattern (27 bp):   
GCCTATCAGATGGACACCATAGGTGGT
Done.