Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000494.1 Kokia drynarioides strain JFW-HI SEQ_111369, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1393
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.30


Found at i:1218 original size:12 final size:11

Alignment explanation


    Indices: 1193--1244  Score: 50
    Period size: 12  Copynumber: 4.5  Consensus size: 11

       1183 AAATTGAATA

                 *      
       1193 AATTTGAATATT
          1 AATTTTAAT-TT

                        
       1205 AATTTTATATTT
          1 AATTTTA-ATTT

              *         
       1217 AACTTTAATTAT
          1 AATTTTAATT-T

                *      
       1229 AATTATAATTT
          1 AATTTTAATTT

                 
       1240 AATTT
          1 AATTT

       1245 ACAATTATGT


Statistics
Matches: 33,  Mismatches: 5, Indels: 5
        0.77            0.12        0.12

Matches are distributed among these distances:
  11    8  0.24
  12   23  0.70
  13    2  0.06

ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56


Consensus pattern (11 bp):   
AATTTTAATTT

Found at i:1226 original size:18 final size:17

Alignment explanation


    Indices: 1203--1244  Score: 50
    Period size: 18  Copynumber: 2.4  Consensus size: 17

       1193 AATTTGAATA

                               
       1203 TTAATTTTATATT-TAACT
          1 TTAATTTTA-ATTATAA-T

                  *          
       1221 TTAATTATAATTATAAT
          1 TTAATTTTAATTATAAT

                   
       1238 TTAATTT
          1 TTAATTT

       1245 ACAATTATGT


Statistics
Matches: 21,  Mismatches: 2, Indels: 3
        0.81            0.08        0.12

Matches are distributed among these distances:
  17   10  0.48
  18   11  0.52

ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60


Consensus pattern (17 bp):   
TTAATTTTAATTATAAT
Done.