genome.fa.s4942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004942.1 Kokia drynarioides strain JFW-HI SEQ_118652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24042

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2328--2439	37	3.0	37	97	0	206	27	11	29	31	1.92
4068--4108	19	2.3	18	80	19	50	41	0	0	58	0.98
4075--4119	22	2.2	21	88	11	67	44	0	0	55	0.99
9067--9092	7	3.7	7	100	0	52	53	15	0	30	1.42
15355--15387	16	2.1	16	88	5	50	3	9	45	42	1.51
15885--16107	39	5.7	39	73	6	135	24	9	31	34	1.87
15889--16063	78	2.2	79	86	3	246	24	9	33	33	1.87
15920--16097	40	4.5	40	75	5	137	25	10	29	34	1.89
16047--17700	38	42.8	38	67	12	531	27	16	23	33	1.95
16047--17176	155	7.3	152	72	10	438	27	16	23	32	1.96
16278--16519	117	2.1	114	83	3	297	26	15	25	32	1.96
16393--17776	79	17.8	77	73	10	341	27	15	22	33	1.95
16564--16791	117	1.9	117	82	3	280	28	18	21	31	1.97
16885--17176	151	1.9	152	84	3	392	28	16	22	32	1.96
17081--17293	117	1.8	114	84	5	284	28	15	23	32	1.95
16885--17495	269	2.3	263	77	8	658	28	16	21	33	1.95
17491--17777	79	3.6	79	82	7	368	26	15	22	35	1.94
17515--17804	41	7.3	41	70	12	192	26	14	24	34	1.94
17465--17801	158	2.1	160	81	8	422	26	15	24	34	1.94
18110--18261	49	3.1	48	70	12	121	18	28	17	36	1.93
18295--18513	98	2.2	98	82	3	235	19	30	17	33	1.95
18371--18513	49	2.9	49	73	8	155	18	30	16	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20324--20362	9	4.4	9	84	15	55	0	17	0	82	0.68
20325--20361	13	2.9	12	92	8	56	0	18	0	81	0.70
20350--20402	21	2.5	21	68	0	52	7	20	5	66	1.38
23524--23578	24	2.3	24	81	3	67	41	0	3	54	1.18
23537--23588	24	2.2	24	82	6	61	40	0	1	57	1.10
23519--23646	61	2.1	62	91	1	204	41	1	5	51	1.34

Tables:   1

The End!