genome.fa.s4943.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004943.1 Kokia drynarioides strain JFW-HI SEQ_118653, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24699

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2328--2439	37	3.0	37	97	0	206	27	11	29	31	1.92
4732--4776	22	2.2	19	88	11	63	46	0	0	53	1.00
9724--9749	7	3.7	7	100	0	52	53	15	0	30	1.42
16012--16044	16	2.1	16	88	5	50	3	9	45	42	1.51
16542--16764	39	5.7	39	73	6	135	24	9	31	34	1.87
16546--16720	78	2.2	79	86	3	246	24	9	33	33	1.87
16577--16754	40	4.5	40	75	5	137	25	10	29	34	1.89
16704--18357	38	42.8	38	67	12	531	27	16	23	33	1.95
16704--17833	155	7.3	152	72	10	438	27	16	23	32	1.96
16935--17176	117	2.1	114	83	3	297	26	15	25	32	1.96
17050--18433	79	17.8	77	73	10	341	27	15	22	33	1.95
17221--17448	117	1.9	117	82	3	280	28	18	21	31	1.97
17542--17833	151	1.9	152	84	3	392	28	16	22	32	1.96
17738--17950	117	1.8	114	84	5	284	28	15	23	32	1.95
17542--18152	269	2.3	263	77	8	658	28	16	21	33	1.95
18148--18434	79	3.6	79	82	7	368	26	15	22	35	1.94
18172--18461	41	7.3	41	70	12	192	26	14	24	34	1.94
18122--18458	158	2.1	160	81	8	422	26	15	24	34	1.94
18767--18918	49	3.1	48	70	12	121	18	28	17	36	1.93
18952--19170	98	2.2	98	82	3	235	19	30	17	33	1.95
19028--19170	49	2.9	49	73	8	155	18	30	16	34	1.93
20981--21019	9	4.4	9	84	15	55	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20982--21018	13	2.9	12	92	8	56	0	18	0	81	0.70
21007--21059	21	2.5	21	68	0	52	7	20	5	66	1.38
24181--24235	24	2.3	24	81	3	67	41	0	3	54	1.18
24194--24245	24	2.2	24	82	6	61	40	0	1	57	1.10
24176--24303	61	2.1	62	91	1	204	41	1	5	51	1.34

Tables:   1

The End!