Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004946.1 Kokia drynarioides strain JFW-HI SEQ_118660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36


Found at i:1365 original size:18 final size:20

Alignment explanation


    Indices: 1328--1366  Score: 55
    Period size: 18  Copynumber: 2.0  Consensus size: 20

       1318 AAATGGAATT

                                 
       1328 TTTTTTATTTAAGTATTTTAA
          1 TTTTTTATTTAAG-ATTTTAA

                                
       1349 TTTTTT-TTTAA-ATTTTAA
          1 TTTTTTATTTAAGATTTTAA

       1367 ATTAGTAAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 3
        0.86            0.00        0.14

Matches are distributed among these distances:
  18    7  0.39
  20    5  0.28
  21    6  0.33

ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69


Consensus pattern (20 bp):   
TTTTTTATTTAAGATTTTAA
Done.