Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000495.1 Kokia drynarioides strain JFW-HI SEQ_111370, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6385
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:6103 original size:23 final size:21

Alignment explanation


    Indices: 6024--6109  Score: 72
    Period size: 21  Copynumber: 4.1  Consensus size: 21

       6014 TTACGAATAA

                    *            
       6024 TTATATATTTATATT-AT-TT
          1 TTATATATATATATTAATATT

                  *                
       6043 TTA-ATTTA-ATATTGAATAATT
          1 TTATATATATATATT-AAT-ATT

                      *          
       6064 TTATATATATTTATTAATATT
          1 TTATATATATATATTAATATT

                          *        
       6085 TTATATATAGTCATCTTAATATT
          1 TTATATATA-T-ATATTAATATT

              
       6108 TT
          1 TT

       6110 TTAATATTTA


Statistics
Matches: 53,  Mismatches: 6, Indels: 12
        0.75            0.08        0.17

Matches are distributed among these distances:
  17    5  0.09
  18    3  0.06
  19    5  0.09
  21   17  0.32
  22    8  0.15
  23   15  0.28

ACGTcount: A:0.36, C:0.02, G:0.02, T:0.59


Consensus pattern (21 bp):   
TTATATATATATATTAATATT
Done.