Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004950.1 Kokia drynarioides strain JFW-HI SEQ_118668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8280
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34

Warning! 12 characters in sequence are not A, C, G, or T


Found at i:4433 original size:18 final size:18

Alignment explanation


    Indices: 4393--4435  Score: 52
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       4383 TTTTTCATTG

                              
       4393 TAATTAATTTAAAATTTT
          1 TAATTAATTTAAAATTTT

            *            *     
       4411 CAATTAA-TTAAATTTATT
          1 TAATTAATTTAAAATT-TT

                   
       4429 TAATTAA
          1 TAATTAA

       4436 AAAAATTATT


Statistics
Matches: 21,  Mismatches: 3, Indels: 2
        0.81            0.12        0.08

Matches are distributed among these distances:
  17    7  0.33
  18   14  0.67

ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51


Consensus pattern (18 bp):   
TAATTAATTTAAAATTTT

Found at i:8079 original size:2 final size:2

Alignment explanation


    Indices: 8072--8098  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       8062 ACATGATTCG

                                                    
       8072 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

       8099 AAGAGTGTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.