Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004962.1 Kokia drynarioides strain JFW-HI SEQ_118690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13263
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Warning! 70 characters in sequence are not A, C, G, or T
Found at i:822 original size:216 final size:212
Alignment explanation
Indices: 414--4067 Score: 2777
Period size: 216 Copynumber: 17.2 Consensus size: 212
404 TTTTTTGAAC
* * ** * *
414 ATCGCATCA-TTGGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * * ** * * *
478 TTATTTACGTGAGAATTGTTTCACTCATGGTT-ATAGGCTGAACTGACAAACTTTGCAAATTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GGC-GAACTTTCGAACTGT-CAAACTTTT
* * * * * **
542 TCAAGTTCTTTTACAACTTTGGCTCCTTAAAGTATTCAAGATGATCTATTTTTTCGAACAATTTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
* * * *
607 TTGAACATTCCGTTCACGAGAA
191 TCGAACATTCCATTCTCGGGAA
*
629 ATCGCATCATTAGGTCCAAATAAGCTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
** *
694 TTATTTATGTGAGAAACGTTTCTCTCTTTGTTCCTGGTCGAACTTTCGAACTAGTCAAACTTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGG-CGAACTTTCGAACT-GTCAAACTTTTT
* * * * * *
759 CAAGTTCTTTTATAGCTTCGGTTCCTTAGATTATTCAAGACAATCGATTCCTTCAAGCAA-TTTT
128 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCAA-CAATTTTT
* *
823 CTGAGCATTCCATTATCGGGAA
192 C-GAACATTCCATTCTCGGGAA
* * * *
845 ATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTTTTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * * * *
910 TTATTTCTGT--G-A--G--TCTCTATTGGTTCATGGCTGAACTTCCGAACTTTTCAAACTTTGT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGGC-GAACTTTCGAAC-TGTCAAACTTTTT
* * * *
968 CGAGTACTTTTATATCTTTGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGATCAATTTTT
128 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTTT
* *
1033 TGAACATTCTATTCTCGGGAA
192 CGAACATTCCATTCTCGGGAA
* * * *
1054 ATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAA-AAGCTTTCGGTCTTTGAATTAAAAA
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAA-CTTTTGGTCTTTGGATTAAAAA
* * * * * * * * **
1118 CTTATTTACGTAAGAATTATTTCACTCGTGGTT-CTAGGCAAAACTTAC--TTTGT-AAACTTTT
64 TTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GGC-GAACTTTCGAACTGTCAAACTTTT
** ** * *
1179 TCGAGTTCTTTTATAACTTTTTTTCCTTAAAGTATTCAAGATTATCCATTTCTTCGAACAATTTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
* * *
1244 TCGAACATTTCGTTCTTGGGAA
191 TCGAACATTCCATTCTCGGGAA
* * * *
1266 ATTGCATCATTTGGTCTAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTTGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * *
1331 TTATTTTTGTGGGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACATGTCAAACTTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGG-CGAACTTTCGAAC-TGTCAAACTTTTT
* * *
1394 CGAGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTT
128 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTTT
*
1459 CGAACATTCCATTTTCGGGAA
192 CGAACATTCCATTCTCGGGAA
* * * * * * *
1480 ATCACATCATTTGGTCCAAATAATTAGTCCTTTTCTAAAAAACTTTTGGTCTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
** * * * * *
1545 TTATTTACATGATAATTATTTCACTCTTGGTT-CTAGGCCGAACTTTCAAACTTTGCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GG-CGAACTTTCGAACTGT-CAAACTTTT
* * * * *
1609 TTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTTCGTCGAACAATTTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
*
1674 TCGAACATTCCATTCTCGAGAA
191 TCGAACATTCCATTCTCGGGAA
* * *
1696 ATCACATCATTTGGTCGAAATAATCTATCATTTTGTAAACAACTTTTGGT-TCTTGGATTAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCT-TTGGATTAAAAA
* * *
1760 TTTTTTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAAC-TTCAGAACTTGTTAAACTTT
64 TTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGG-CGAACTTTC-GAAC-TGTCAAACTTT
* * * * **
1822 TTCGAGTACGTTTATAGCTCTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGCTCAATTT
126 TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTT
*
1887 TTCGAACATTCCAATC-CTGGGAA
190 TTCGAACATTCCATTCTC-GGGAA
* * ** * *
1910 ATCGCATCA-TTGGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
** * * * * * ** * * *
1974 TTATTTACATGAGAATTATTTCACCCTTGATT-CTAAGCTGAACTGCCAAAATTTGCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GGC-GAACTTTCGAACTGT-CAAACTTTT
* *
2038 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCAAACAATTTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
* ***
2103 TCGAACATTCCGTTCTTAAGAA
191 TCGAACATTCCATTCTCGGGAA
* * * * *
2125 ATCGCATTATTAGGTCCAAATAATCTGTTATTTTGTAAACAACTTTTGGTCTATGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* ** * *
2190 TTATTTATGTGGGAAACGTTTCTGTCTTGGTTCTTGGCCGAAC-TTCTGAACTAGTCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGG-CGAACTTTC-GAACT-GTCAAACTTTT
* * * * * * ** ** *
2254 TCAAGTTCTCTTATAGCTTCGGTTCCTTAGAGTATTCAAGATGATTTATTCCTTCGAGTAA-TTC
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
* * *
2318 TCTGAGCATTCCATTCTCCGAAA
191 TC-GAACATTCCATTCTCGGGAA
* * ** * * * * * *
2341 ATCGCATCACTT-GTCCAAGTAGTTAGTCCTTTTGTAAAAAACTTAT--T-TAT-G--TGAGAA-
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * ** * * * *
2398 TTA-TT-TCT-----TT-CTTCGT-TCTTGG-CCAAACTTCCGAACTTTACAAACTTTTC-GA-G
65 TTATTTATGTGAGAATTGTTTC-TCTCTTGGTTC---CTGGCGAACTTT-CGAAC-TGTCAAACT
* * * * * * * * *
2451 TTTT----TT-TATAACT--TTG--GTTCCCTAAAGTAATCAAGACGATCCATTTCTTTGAACAA
124 TTTTCGAGTTCTTTTA-TAACTTTGGTTCCTTAAAGTATTCAAGACGATCGA-TTCCTTCAACAA
* *
2507 TTATTCAAACATTCCATTCTCGGGAA
187 TTTTTCGAACATTCCATTCTCGGGAA
* * * * *
2533 ATCTCATCATTTGGTACAAATAATCTGTCATTTTGTCAACAACTTTTGGTCTTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * ** * *
2598 TTATTTATGTGAGAATTGTTTCCCTCTTGGTTCTTAGATGAACTTTTGAACTTCTCAAACTTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GGCGAACTTTCGAAC-TGTCAAACTTTTT
* * * * ** * *
2663 CGAGTACTTTTATATCTTCGGTTCTTTAAAGTATTCAAGATTAT-GATTCCATCGAGCAATTTTT
128 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTTT
* *
2727 CGGATATTCCATTCTCGGGAA
192 CGAACATTCCATTCTCGGGAA
* * * *
2748 ATCGCATCATTTGGT-----T--C---C-TTTTGTAGAA-AACTTTCGATCTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCCAAATAACTATCATTTTGTA-AACAACTTTTGGTCTTTGGATTAAAAAT
* * * * * * *
2801 TTATTTACGTTAGAATTATTTCACTCATGG-TACTAGGCCGAAC-TT---ACTTTGCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GG-CGAACTTTCGAACTGT-CAAACTTTT
* * * * * * *
2861 TTGAGTTCGTTTATAACTTTTGCTCCTTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
* *
2926 TCGAACATTCCGTTCTCGAGAA
191 TCGAACATTCCATTCTCGGGAA
* * * * *
2948 ATTGCATCATTTGGTCCAAATAATCTGTCATTTTTTAAACAACTTTTGGTATTTGGATTAAGAAT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * *
3013 TTATTTATGTGTGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACCTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGG-CGAACTTTCGAAC-TGTCAAA-CTTTT
* * * * * * * *
3076 T-GAGTACTTTTATAACTTCGGTTCGTTAAAGTATTCAAGATGATCAATTCCTTTGAGCAAATTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCC-TTCAACAATTTT
* * *
3140 TCGAACATTCCATTATCTGAAA
191 TCGAACATTCCATTCTCGGGAA
* * * * * * * * *
3162 ATCTCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACATTCGGTCTTTGAATTAAAGAC
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * * * * *
3227 TTATTTACGTGATAATTATTTCACTCTTGGTT-CTAGGCCGAACTTCCAAACTTTGCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GG-CGAACTTTCGAACTGT-CAAACTTTT
* * * * * * *
3291 TCGAGTTCTTTTATAACCTTGATTCCTTAAAGTATTCAAGATGATCCATTTCGTCGAACAACTTT
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
*
3356 TCAAACATTCCATTCTCGGGAA
191 TCGAACATTCCATTCTCGGGAA
* *
3378 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTGAACAACTTTTGGT-TCTTGGATT-AAAA
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCT-TTGGATTAAAAA
* * *
3441 TTTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGTCGAA-ATTCAGAACTTGTAAAACTTT
64 TTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGG-CGAACTTTC-GAAC-TGTCAAACTTT
* * * *
3503 TTCGAGTACATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCACGCAATTT
126 TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCA-ACAATTT
* *
3568 TTCAAACATTCCATTCTTGGGAA
190 TTCGAACATTCCATTCTCGGGAA
* * *
3591 ATCGCATCA-TTGGTCCAAATAACTAGTCTTTTTGTAAAAAAACTTTAT-GTCTTTGAATTAAAA
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGT-AAACAACTTT-TGGTCTTTGGATTAAAA
* * * ** * * *
3654 ACTTATTTACGTGAGAATTGTTTCACTCTTGGTT-CTAGGCTGAACTGCCAAACTTTGCAAATTT
63 ATTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCT-GGC-GAACTTTCGAACTGT-CAAACTT
* * ** *
3718 TTTCGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATGCAAGACGATAAATTTCTTCAAACAATT
125 TTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATT
* * **
3783 TTTCGAACATTCCGTACTCAAGAA
189 TTTCGAACATTCCATTCTCGGGAA
* * * * *
3807 ATCGCATCATTAGTTCCAAATAATCTGTTATTTTGTAAACAACTTTTGGCCTTTGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* *
3872 TTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGCTGAAC-TTCTGAACTAGTCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGGC-GAACTTTC-GAACT-GTCAAACTTTT
* * ** * * * * * * * *
3936 CCAAGTTCCCTTATAGCTTCGGTTCCTTGAAGTATTTATGACGATTGATTCCTTCGAGCAA-TTC
127 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-AACAATTTT
*
4000 TCTGAGCATTCCATTCTCGGGAA
191 TC-GAACATTCCATTCTCGGGAA
** ** * *
4023 ATCGCATCACGTGGTCCAAATAGTTAGTCCTTTTGTAAAAAACTT
1 ATCGCATCATTTGGTCCAAATAACTA-TCATTTTGTAAACAACTT
4068 ATTTATGTGA
Statistics
Matches: 2692, Mismatches: 590, Indels: 313
0.75 0.16 0.09
Matches are distributed among these distances:
192 50 0.02
193 31 0.01
194 2 0.00
195 4 0.00
196 5 0.00
197 1 0.00
198 2 0.00
199 51 0.02
200 63 0.02
201 9 0.00
202 16 0.01
203 57 0.02
204 3 0.00
205 1 0.00
206 10 0.00
207 13 0.00
208 21 0.01
209 165 0.06
210 37 0.01
211 17 0.01
212 217 0.08
213 198 0.07
214 432 0.16
215 253 0.09
216 996 0.37
217 36 0.01
218 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (212 bp):
ATCGCATCATTTGGTCCAAATAACTATCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATT
TATTTATGTGAGAATTGTTTCTCTCTTGGTTCCTGGCGAACTTTCGAACTGTCAAACTTTTTCGA
GTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCAACAATTTTTCGAA
CATTCCATTCTCGGGAA
Found at i:2127 original size:429 final size:429
Alignment explanation
Indices: 414--7721 Score: 4613
Period size: 430 Copynumber: 17.0 Consensus size: 429
404 TTTTTTGAAC
* * ** * *
414 ATCGCATCA-TTGGTCCAAATAA-CTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAA
1 ATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAAT
* * * * * * ** * *
477 CTTATTTACGTGAGAATTGTTTCACTCATGGTTATAGGCTGAACTGACAAACTT-TGCAAATTTT
64 TTTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTCCGAACTTGT-CAAACTTT
* * * * * * ** *
541 TTCAAGTTCTTTTACAACTTTGGCTCCTTAAAGTATTCAAGATGATCTATTTTTTCGAACAATTT
126 TTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTT
* * * * * * * *
606 TTTGAACATTCCGTTCACGAGAAATCGCATCATTAGGTCCAAATAAGCTA-TCATTTTGTAAACA
191 TTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAA-TTAGTCCTTTTGTAAAAA
* * * * *** * * *
670 ACTTTTGGTCTTTGGATTAAAAATTTATTTATGTGAGAAACGTTTCTCTCTTTGTTCCT-GGTCG
255 ACTTTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTT-CTAGGCCG
* * * * * * * *
734 AACTTTCGAAC-TAGTCAAACTTTTTCAAGTTCTTTTATAGCTTCGGTTCCTTAGATTATTCAAG
319 AACTTCCAAACTTTG-CAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
* * * * * *
798 ACAATCGATTCCTTC-AAGCAA-TTTTCTGAGCATTCCATTATCGGGAA
383 ACGATCCATTTCTTCGAA-CAATTTTTC-GAACATTCCATTCTCGAGAA
* *
845 ATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTTTTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG-TCTTGGATTAAAATT
* * * * * * *
910 TTATTTCTGT--G-A--GTCTCTATTGGTTCATGGCTGAACTTCCGAACTTTTCAAACTTTGTCG
65 TTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCG
* * * *
970 AGTACTTTTATATCTTTGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGATCAATTTTTTG
130 AGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTTCG
* *
1035 AACATTCTATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAGCTTT
195 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTT
* * **
1100 CGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTATTTCACTCGTGGTTCTAGGCAAAACTT-
260 CGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTC
* ** **
1164 ---ACTTTGTAAACTTTTTCGAGTTCTTTTATAACTTTTTTTCCTTAAAGTATTCAAGATTATCC
325 CAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
1226 ATTTCTTCGAACAATTTTTCGAACATTTCGTTCTTGGGAA
390 ATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * * *
1266 ATTGCATCATTTGGTCTAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTTGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAATT
* * *
1331 TTATTTTTGTGGGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACATGTCAAACTTTTTCG
65 TTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCG
* * *
1396 AGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCG
130 AGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTTCG
* * *
1461 AACATTCCATTTTCGGGAAATCACATCATTTGGTCCAAATAATTAGTCCTTTTCTAAAAAACTTT
195 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTT
* * * *
1526 TGGTCTTTGAATTAAAAACTTATTTACATGATAATTATTTCACTCTTGGTTCTAGGCCGAACTTT
260 CGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTC
* *
1591 CAAACTTTGCAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCC
325 CAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
*
1656 ATTTCGTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
390 ATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * *
1696 ATCACATCATTTGGTCGAAATAATCTATCATTTTGTAAACAACTTTTGGTTCTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG-TCTTGGATTAAAATT
* * *
1761 TTTTTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCAGAACTTGTTAAACTTTTTCG
65 TTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCG
* * * **
1826 AGTACGTTTATAGC-TCTGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGCTCAATTTTTC
130 AGTACTTTTATAACTTC-GGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTTC
* *
1890 GAACATTCCAATC-CTGGGAAATCGCATCA-TTGGTCCAAATAACTAGTCCTTTTGTAAAAAACT
194 GAACATTCCATTCTC-GGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACT
* * * * * *
1953 TTCAGTCTTTGAATTAAAAACTTATTTACATGAGAATTATTTCACCCTTGATTCTAAGCTGAACT
258 TTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACT
* *
2018 GCCAAAATTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
323 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* * * **
2083 CAATTTCTTCAAACAATTTTTCGAACATTCCGTTCTTAAGAA
388 CCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * * *
2125 ATCGCATTATTAGGTCCAAATAATCTGTTATTTTGTAAACAACTTTTGGTCTATGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT-TGGATTAAAATT
* ** * *
2190 TTATTTATGTGGGAAACGTTTCTGTCTTGGTTCTTGGCCGAACTTCTGAACTAGTCAAACTTTTT
65 TTATTTATGTGAGAATTGTTTC--TCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTT
* * * * * ** * *
2255 CAAGTTCTCTTATAGCTTCGGTTCCTTAGAGTATTCAAGATGATTTATTCCTTCGAGTAA-TTCT
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* * * * * *
2319 CTGAGCATTCCATTCTCCGAAAATCGCATCACTT-GTCCAAGTAGTTAGTCCTTTTGTAAAAAA-
193 C-GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAAC
** * * *
2382 -------C-TT--A-T------TTA--T--GTGAGAATTATTTCTTTCTTCGTTCTTGGCCAAAC
257 TTTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAAC
* * * * *
2426 TTCCGAACTTTACAAAC-TTTTCGAGTTTTTTTATAACTTTGGTTCCCTAAAGTAATCAAGACGA
322 TTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA
* * * *
2490 TCCATTTCTTTGAACAATTATTCAAACATTCCATTCTCGGGAA
387 TCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * *
2533 ATCTCATCATTTGGTACAAATAATCTGTCATTTTGTCAACAACTTTTGGTCTTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAATT
* ** ** *
2598 TTATTTATGTGAGAATTGTTTCCCTCTTGGTTCTTAGATGAACTTTTGAACTTCTCAAACTTTTT
65 TTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTT
* * * *
2663 CGAGTACTTTTATATCTTCGGTTCTTTAAAGTATTCAAGATTAT-GATTCCATCGAGCAATTTTT
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* * *
2727 CGGATATTCCATTCTCGGGAAATCGCATCATTTGG----------T--TCCTTTTGTAGAAAACT
193 CGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACT
* * * *
2780 TTCGATCTTTGAATTAAAAACTTATTTACGTTAGAATTATTTCACTCATGGTACTAGGCCGAACT
258 TTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACT
* * * * *
2845 T----ACTTTGCAAACTTTTTTGAGTTCGTTTATAACTTTTGCTCCTTAAAGTATTCAAGATGAT
323 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
*
2906 CCATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGAGAA
388 CCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * *
2948 ATTGCATCATTTGGTCCAAATAATCTGTCATTTTTTAAACAACTTTTGGTATTTGGATTAAGAA-
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGT-CTTGGATTAA-AAT
*
3012 TTTATTTATGTGTGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACCTTTTT
64 TTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAA-CTTTTT
* * * *
3077 -GAGTACTTTTATAACTTCGGTTCGTTAAAGTATTCAAGATGATCAATTCCTTTGAGCAAATTTT
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* * * * *
3141 CGAACATTCCATTATCTGAAAATCTCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACA
193 CGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACT
* *
3206 TTCGGTCTTTGAATTAAAGACTTATTTACGTGATAATTATTTCACTCTTGGTTCTAGGCCGAACT
258 TTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACT
* * *
3271 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACCTTGATTCCTTAAAGTATTCAAGATGAT
323 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* * * *
3336 CCATTTCGTCGAACAACTTTTCAAACATTCCATTCTCGGGAA
388 CCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
*
3378 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTGAACAACTTTTGGTTCTTGGATTAAAA-T
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG-TCTTGGATTAAAATT
* * * *
3442 TTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGTCGAAATTCAGAACTTGTAAAACTTTTTCG
65 TTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCG
* *
3507 AGTACATTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTC-ACGCAATTTTTC
130 AGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGA-GCAATTTTTC
* * * *
3571 AAACATTCCATTCTTGGGAAATCGCATCA-TTGGTCCAAATAACTAGTCTTTTTGTAAAAAAACT
194 GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGT-AAAAAACT
** * *
3635 TTATGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCTTGGTTCTAGGCTGAACT
258 TTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACT
* * * *
3700 GCCAAACTTTGCAAATTTTTTCGAGTTCTTTTACAACTTTGGTTCCTTAAAGTATGCAAGACGAT
323 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
** * * * *
3765 AAATTTCTTCAAACAATTTTTCGAACATTCCGTACTCAAGAA
388 CCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * * * *
3807 ATCGCATCATTAGTTCCAAATAATCTGTTATTTTGTAAACAACTTTTGGCCTTTGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAATT
* * * * *
3872 TTATTTATGTGAGAAATGTTTCTCTCTTGGTTCTTGGCTGAACTTCTGAACTAGTCAAACTTTTC
65 TTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTT
* * ** * * * * * * *
3937 CAAGTTCCCTTATAGCTTCGGTTCCTTGAAGTATTTATGACGATTGATTCCTTCGAGCAA-TTCT
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* ** *
4001 CTGAGCATTCCATTCTCGGGAAATCGCATCACGTGGTCCAAATAGTTAGTCCTTTTGTAAAAAA-
193 C-GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAAC
* * *
4065 -------C-TT--A-T------TTA--T--GTGAGAATTATTTCTCTCTTTGTTCTAGGCCAAAC
257 TTTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAAC
* * * * *
4109 TTCCGAACTTTACAAACTTTTTTGAGTTTTTTTATAACTTTGGTTCCTTAAAGTATTCAAGGCGA
322 TTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA
* * *
4174 TCCATTTCTTCGAACAATTTTTCAAACATTCCA-CCATCGGGAA
387 TCCATTTCTTCGAACAATTTTTCGAACATTCCATTC-TCGAGAA
* * ** ** **
4217 ATCGCATC-TGTTGGTTCTTGCCTGAACTTCTGAA-CTTGTCAAACTTTGTCGAGTACTTTTATA
1 ATCGCATCAT-TTGG----T-CC--AA---AT-AATC-TGTC--ATTTTGTAAACAACTTTT-GG
* ** * **
4280 TCTTCGGTTCCTTAAAGAATTCACGATGATTGATTCCTCTGAGCAA-T-TTTCATAACATTTCAT
50 TCTT-GG---ATT-AA-AA-T-----T--TT-ATTTATGTGAG-AATTGTTTC-T--C--TTGGT
* * ** * *
4343 TCTTGG--G-A-TAT-CGCATCATGTGGCCCAAA-TAATT--AGTCCTTTTGTAAAAAACTTTCG
94 TCTTGGCCGAACT-TCCG-AAC-T-T-G-TCAAACTTTTTCGAGTAC-TTT-T--ATAAC-TTCG
* * * * * * ** *
4400 G-T-CTTTAA--ATT-AAAACTTAT---TTACGT-GAG-AATTATTTC-ACTCA-T-GGTTCTAG
148 GTTCCTTAAAGTATTCAAGA-TGATCGATTCCTTCGAGCAATT-TTTCGA-ACATTCCATTCTCG
* ** ** *
4452 GCAGAA-CTTA-C-TTT-G--CAAACTTTTTCGAGT--TATTT-T--ATAACTTT-GGCTCCTTA
210 GGA-AATCGCATCATTTGGTCCAAA-TAATT--AGTCCT-TTTGTAAAAAACTTTCGG-T-CTT-
* * * * * * ** * *
4505 AAGTATTCAAGATGA-TCCATTT-CTTCGAACAATT-TTTCGAACAT-TCCGTTCTCGG--GAAA
267 -TGAATT-AA-A-AACT-TATTTACGT-G-AGAATTATTTC--AC-TCTTGGTTCTAGGCCGAAC
* * * * * * **
4564 TTGCATCATTTTGTCCAAA-TAATCTGTC-A-TT-TTGTAAACAACTTTTGGTCTTTGGATTAAA
322 TTCCA-AACTTTG--CAAACT--T-TTTCGAGTTCTT-T-TATAAC-TTTGG---TT-CCTT--A
* ** * * * * * * *
4625 AATTTATTTGTGTGAGAATTGTTTCTCTTGGTTCTT-GGACGAA-CTTTCGAACTTGTCAAACTT
372 AA-GTA--T-T-CAAG-A-CG-ATC-CAT--TTCTTCGAAC-AATTTTTCGAACAT-TC---CAT
*
4688 TTTCGAG--
421 TCTCGAGAA
* * * * * * *
4695 -TCCCTTTATAACTTCGGTTCCTTAAAATATTCAAGATGATCCATTCCTTCG--AGCTATTTTTC
1 ATCGC---ATCA-TTTGG-TCC---AAATAATC----TG-T-CATT--TT-GTAAACAACTTTT-
** ** *** * * ** * ** * ** ***
4757 GAACATTACATTCTCGAGAAATCGCATCTTTTGGGCCAAAT-AATCT-GTCATT-TTGTAAAGAA
48 GGTC-TTGGA-T-T--A-AAATTTTAT-TTATGTGAGAATTGTTTCTCTTGGTTCTTG-GCCGAA
** ** * * * * ** * *
4819 CTTTTGGTCTTTGGATTAAAAACTTATTTATGTGAG-AATTTTTTCTCTCTTGGTTCTTGGTTGA
105 CTTCCGAAC-TT-G--T-CAAAC-T-TTT-T-CGAGTACTTTTATAACT-TCGGTTC---CTT-A
* * * ** * * * *
4883 ACTTTCGAACTTGTCAAAACTTTTTCGAGTTCTTTTATAACTTTG-GTTCCTTAAAATATTCAAG
156 A----AGTA--T-TCAAGA--TGATCGA-TTC--------CTTCGAG---C---AATTTTTCGA-
* * * * * *** * * * *
4947 ACAATCAATTCCTTCGAGCAATTTTC-CAAACATTCCAACCTCGAGA-AATT-GCACCATTTGGT
196 ACATTCCATT-C-TCG-GGAA--ATCGC-ATCATT---TGGTCCAAATAATTAG-TCC-TTTTGT
* *
5009 CAAAATAGTTT--GTCCTTTTCTAAAAAAGGTTTTGATCTTTGAATTAAAAACTTATTTACGTGA
250 -AAAAAACTTTCGGT-C--T--------------------TTGAATTAAAAACTTATTTACGTGA
* * *
5072 GAATTATTTCACTCTTGGTTCTAGGCTGAACTGCCAAACTTTGCAAACTTTTTTGAGTTCTTTTA
291 GAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTA
* * *
5137 TAACTTTGGTTCCTTAAAGTGTTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTTCGT
356 TAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTCCAT
5202 TCTC-AGGAA
421 TCTCGA-GAA
* *
5211 ATCGCATCATTTGGTCCAAATAATCCGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAATTT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAATT
* ** * * **
5276 TTTTTTATGTGAGAAACGTTTCTCTCTTGGTTCTTGGTCTAACTTTTGAACTTGTCAAACTTTTT
65 TTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTT
* * ** * ** * * * * *
5341 CAAGTTCTTTTATTGCTTCGGTTCCTTAAAGTGTTCAAGACAATTGCTTCTTTCGACCAATTTTC
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* * * *
5406 CGAGCATTCCATTCTCGAGAAATCGTATCATTTGGTCCAAATAGTTAGTCCTTTTGT--AAAA--
193 CGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACT
* *
5467 -----------AA-T----A--TATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACT
258 TTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACT
* * *
5514 TCCGAACTTTACAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
323 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
** * * *
5579 TAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCGGGAA
388 CCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
** * *
5621 ATCGCATCATTTGGTCTGAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTAGATT-AAATT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAATT
* * *
5685 TTATTTATGTGAGAAACATT-TCTCTCTTGGTTCTTAGCCGAACTTCCGAACTAGTCAAACTTTT
65 TTATTTATGTGAG--A-ATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTT
* * * *
5749 TC-A--AGTTTTATAGCTTCGGTTCCTTAAA-TATT--ACATGATCAATTCCTTCGAGCAATTTT
127 TCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTT
* * * * * *
5808 TTGAGCATTTCATACTCGGGAAATCGCATAATTTGGTCCAAATAGTTAGTCCTTTTGT-AAAAA-
192 TCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAAC
* *
5871 -------C-TT--ATT-----C------ACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAAC
257 TTTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAAC
* * * * *
5915 TTTCGAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGGTCCTTAAAGTATTTAAGGCGA
322 TTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGA
* * * *
5980 TCAATTTCTTCGAACAATTTTTCGAACATTACATTTTTGAGAA
387 TCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* *
6023 ATCGCATCATTTGGTACAAATAATCTGTCATTTAGTAAACAACTTTTGGTCTTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAATT
* ** *
6088 TTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGTTGCACTTCCGAACTTGTCAAACTTTTT
65 TTATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTT
* * *
6153 CGAGTACTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTT
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* * * *
6218 CCAACATTCCATTCTCAGGAAATCACATCATTTGGTCCAAATAATTAGTCCATTTGTAAAAAACT
193 CGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACT
* * * * * * *
6283 TTTGATCATTGAATTAAAAAATTATTTAAGTGAGAATTATTTCACTCTAGGCTCTAGGCCGAACT
258 TTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACT
* * * ** *
6348 TCCAAAGTTTGCAAACTTTTTTGAGTTCTTTTATAACTTCGAATCCTTAAAGTATTCAAGATGAT
323 TCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* * * * * *
6413 CAATTCCTTCGAGCAATTTTTCGAAAATTCCATTTTCTAGAA
388 CCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * *
6455 ATCGCATCATTTGGTCCAAATAAT-TAGT-ACTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAA
1 ATCGCATCATTTGGTCCAAATAATCT-GTCA-TTTTGTAAACAACTTTTGGTC-TTGGATT-AAA
* * * * *
6518 ACTTT-TTTATGTGATAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTAG-CAAACT
62 ATTTTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTCCGAACTT-GTCAAACT
* * ** * * * * *
6581 TTTTTGAGTTCTTTTA-AATCTTTTGTTCCTTAAAGTATTCAAGACGATCCATTTCATCGAACAA
124 TTTTCGAGTACTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAA
* * ** * *
6645 TTTTTC-AAGCATTCCGTTCTCTGGAAAAAGCATCATTCGGTCCAAATAATCTA-TCATTTTGTA
188 TTTTTCGAA-CATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGTA
* * * * * * * * *
6708 AACAACTTTTGGT-TCTTGGATTAGAAATTTATTTATGCGAGAATTGTTT--CTCTTGGTTCTTG
251 AAAAACTTTCGGTCT-TTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAG
* * *
6770 GCCGAACTTCCCAAC-TTGTCAAACTTTTTCGAGTACTTTTATAACCTTGGTTCCTTAAAGTATT
315 GCCGAACTTCCAAACTTTG-CAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATT
* * * * * * * *
6834 CAATACGATCGA-TTCTTTCGAGCAATTTTTTGAATATTTCATTCTTGGGAA
379 CAAGACGATCCATTTC-TTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* * * * * * * *
6885 ATCGTATCATTTGGTTCAAATAAT-TAGTCGTTTTGTAAAAAACTATCGGTCTTTGAATTAAAAA
1 ATCGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTC-TTGGATTAAAAT
* * * * * * *
6949 CTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTACCAAACTT-TGAAAACTTT
64 TTTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTCCGAACTTGT-CAAACTTT
* * * * * * ** * *
7013 TTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAACCATTTTTTCGAACCATTT
126 TTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTT
* ** * * *
7078 TTCGAACATTCCGTTCTCTAGAAATCGCATCAGTTGGTCCAAATAATCT-GTCATTTTGTAAACA
191 TTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGTAAAAA
* * ** * *** * * * *
7142 ACTTTTGGTCTTTGGATTAAAATTTTATTTATGTGAGAAACGTTTCCCTCTTGATTCTTGGTCGA
255 ACTTTCGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGA
* * * * *
7207 ACTTTCGAACTTT-CAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGAC
320 ACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAC
* ** * *
7271 GATCGA-TTCTTTCGAGTAATTTTTCGAGCATTCCATTCTCGAAAA
385 GATCCATTTC-TTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
* **
7316 ATCGCATCATTTGGTCCAAAT-A---G----TTAGT---C--CTTTT-G---T--A--AAAAACT
1 ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTGGATTAAAATTT
* * * *
7360 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTT-TACAAACTTTTT
66 TATTTATGTGAGAATT-GTT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTGT-CAAACTTTTT
* * * * ** * *
7424 TGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATTAATTTCTTCGAACAATTTTT
128 CGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTT
* * ** ** * * *
7489 CGAACATTTCGTTCTCAAGAAATCGCATCATTTGGTCTGAATAATTTGTCATCTTGTAAAAAACT
193 CGAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACT
* * * * ** * * * *
7554 TTTGGTCTTT-AGATTAAAAATTTATTTATGTGAAAAACATTTCTCTCTTAGTTCTTGGTCGAAC
258 TTCGGTCTTTGA-ATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAAC
** * * * * *
7618 TTCTGAAC-TAGTCAAACTTTTTCAAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATTCAACACG
322 TTCCAAACTTTG-CAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
** * * * *
7682 ATTGATTCCTTCGAGCAATTTTTGGAGCATTCCATTCTCG
386 ATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCG
7722 NNNNNNNNNN
Statistics
Matches: 5505, Mismatches: 938, Indels: 889
0.75 0.13 0.12
Matches are distributed among these distances:
396 14 0.00
398 1 0.00
400 3 0.00
401 1 0.00
402 187 0.03
403 126 0.02
404 6 0.00
405 5 0.00
406 46 0.01
407 44 0.01
408 233 0.04
409 404 0.07
410 411 0.07
411 6 0.00
412 3 0.00
413 74 0.01
414 68 0.01
415 154 0.03
416 4 0.00
417 5 0.00
418 33 0.01
419 3 0.00
420 5 0.00
421 149 0.03
422 11 0.00
423 23 0.00
424 10 0.00
425 188 0.03
426 294 0.05
427 9 0.00
428 41 0.01
429 626 0.11
430 819 0.15
431 267 0.05
432 555 0.10
433 47 0.01
434 6 0.00
435 9 0.00
436 13 0.00
437 7 0.00
438 18 0.00
439 8 0.00
440 13 0.00
441 10 0.00
442 5 0.00
443 5 0.00
450 1 0.00
451 4 0.00
453 1 0.00
454 10 0.00
455 15 0.00
456 10 0.00
457 19 0.00
458 8 0.00
459 8 0.00
460 10 0.00
461 1 0.00
462 7 0.00
463 8 0.00
464 5 0.00
465 5 0.00
466 4 0.00
467 6 0.00
468 8 0.00
469 6 0.00
470 7 0.00
471 13 0.00
472 2 0.00
473 3 0.00
474 6 0.00
475 4 0.00
476 18 0.00
477 18 0.00
478 11 0.00
479 17 0.00
480 14 0.00
481 4 0.00
482 2 0.00
483 1 0.00
485 1 0.00
486 3 0.00
487 6 0.00
488 3 0.00
490 8 0.00
491 8 0.00
492 5 0.00
493 1 0.00
494 4 0.00
495 9 0.00
496 4 0.00
497 2 0.00
498 5 0.00
499 13 0.00
500 8 0.00
501 8 0.00
502 7 0.00
503 4 0.00
504 1 0.00
505 1 0.00
506 3 0.00
507 6 0.00
508 1 0.00
509 9 0.00
510 1 0.00
511 3 0.00
512 6 0.00
513 5 0.00
514 11 0.00
515 1 0.00
516 2 0.00
517 12 0.00
518 12 0.00
519 2 0.00
520 6 0.00
521 3 0.00
522 6 0.00
523 3 0.00
524 7 0.00
525 1 0.00
527 1 0.00
528 3 0.00
530 2 0.00
531 2 0.00
534 7 0.00
535 6 0.00
536 8 0.00
537 13 0.00
538 10 0.00
539 16 0.00
540 4 0.00
541 2 0.00
542 4 0.00
544 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (429 bp):
ATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTGGATTAAAATTT
TATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTTCGA
GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCGATTCCTTCGAGCAATTTTTCGA
ACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACTTTC
GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTCC
AAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
TTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAA
Found at i:5371 original size:216 final size:216
Alignment explanation
Indices: 4227--7360 Score: 2610
Period size: 216 Copynumber: 14.8 Consensus size: 216
4217 ATCGCATCTG
* * * *
4227 TTGGTTCTTGCCTGAAC-TTCTGAACTTGTCAAACTTTGTCGAGTACTTTTATATCTTCGGTTCC
1 TTGGTTCTTGGCTGAACTTTC-GAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * ** * * * * * *
4291 TTAAAGAATTCACGATGATTGA-TTCCTCTGAGCAA-TTTTCATAACATTTCATTCTTGGGATAT
65 TTAAAGTATTCAAGACGATCCATTTCTTC-GAGCAATTTTTC-GAACATTCCATTCTCGAGAAAT
* * * * **
4354 CGCATCATGTGGCCCAAATAAT-TAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATT-AAAACT
128 CGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACT
* *
4417 TATTTACGTGAGAATTATTTCACTC
192 TATTTATGTGAGAATTATTTCTCTC
* * * * * *
4442 ATGGTTCTAGGCAGAAC-TT---ACTT-TGCAAACTTTTTCGAGTTATTTTATAACTTTGGCTCC
1 TTGGTTCTTGGCTGAACTTTCGAACTTGT-CAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * *
4502 TTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATTG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
* * *
4567 CATCATTTTGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTAT
130 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTAT
* *
4632 TTGTGTGAGAATT-GTT-TCTC
195 TTATGTGAGAATTATTTCTCTC
* *
4652 TTGGTTCTTGGAC-GAACTTTCGAACTTGTCAAACTTTTTCGAGTCCCTTTATAACTTCGGTTCC
1 TTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * *
4716 TTAAAATATTCAAGATGATCCATTCCTTCGAGCTATTTTTCGAACATTACATTCTCGAGAAATCG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
* * *
4781 CATCTTTTGGGCCAAATAATCTGTCATTTTGTAAAGAACTTTTGGTCTTTGGATTAAAAACTTAT
130 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTAT
*
4846 TTATGTGAGAATTTTTTCTCTC
195 TTATGTGAGAATTATTTCTCTC
* *
4868 TTGGTTCTTGGTTGAACTTTCGAACTTGTCAAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCC
1 TTGGTTCTTGGCTGAACTTTCGAACTTGTC-AAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * * * ** *
4933 TTAAAATATTCAAGACAATCAATTCCTTCGAGCAATTTTCCAAACATTCCAACCTCGAGAAATTG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
* * * * * * * * *
4998 CACCATTTGGTCAAAATAGTTTGTCCTTTTCTAAAAAAGGTTTTGATCTTTGAATTAAAAACTTA
130 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAA-CTTTTGGTCTTTGGATTAAAAACTTA
* *
5063 TTTACGTGAGAATTATTTCACTC
194 TTTATGTGAGAATTATTTCTCTC
* ** * * *
5086 TTGGTTCTAGGCTGAACTGCCAAACTT-TGCAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCC
1 TTGGTTCTTGGCTGAACTTTCGAACTTGT-CAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * *
5150 TTAAAGTGTTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTTCGTTCTC-AGGAAATC
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGA-GAAATC
* * *** *
5214 GCATCATTTGGTCCAAATAATCCGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAATTTTTT
129 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTA
***
5279 TTTATGTGAGAAACGTTTCTCTC
194 TTTATGTGAGAATTATTTCTCTC
* * **
5302 TTGGTTCTTGGTCT-AACTTTTGAACTTGTCAAACTTTTTCAAGTTCTTTTATTGCTTCGGTTCC
1 TTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
5366 TTAAAGTGTTCAAGACAATTGC--TTCTTTCGACCAATTTTCCGAGCATTCCATTCTCGAGAAAT
65 TTAAAGTATTCAAGACGA-TCCATTTC-TTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAAT
* * * * * ** * *
5429 CGTATCATTTGGTCCAAATAGT-TAGTCCTTTTGTAAAAAA--TAT-AT-TTACG--TGAGAA-T
128 CGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACT
* * * ** **
5486 TATTTCTCT----CTTGGTTCTAGGC
192 TATTTATGTGAGAATTATTTCT-CTC
**** * * *
5508 --CAAACTT--CCGAACTTTACAAACTT-T-------TTT-GAGTTCTTTTATAACTTTGGTTCC
1 TTGGTTCTTGGCTGAACTTT-CGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
** * * * *
5560 TTAAAGTATTCAAGACGATTAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCGGGAAATCG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
** * * * **
5625 CATCATTTGGTCTGAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTAGATT-AAATTTTAT
130 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTAT
**
5689 TTATGTGAGAAACATTTCTCTC
195 TTATGTGAGAATTATTTCTCTC
* * * * * *
5711 TTGGTTCTTAGCCGAACTTCCGAACTAGTCAAACTTTTTCAAG---TTTTATAGCTTCGGTTCCT
1 TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCT
* * * * * * * * *
5773 TAAA-TATT--ACATGATCAATTCCTTCGAGCAATTTTTTGAGCATTTCATACTCGGGAAATCGC
66 TAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGC
* * * * ** * *
5835 ATAATTTGGTCCAAATAGT-TAGTCCTTTTGT-AAAAACTTAT--TC--ACG--TGAGAA-TTAT
131 ATCATTTGGTCCAAATAATCT-GTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTAT
* * * ** **
5891 TTCTCT----CTTGGTTCTAGGC
195 TTATGTGAGAATTATTTCT-CTC
**** * * * *
5910 --CAAACTT-TC-GAACTTTGCAAACTT-T--------TTCGAGTTCTTTTATAACTTTGGGTCC
1 TTGGTTCTTGGCTGAACTTT-CGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * * * *
5962 TTAAAGTATTTAAGGCGATCAATTTCTTCGAACAATTTTTCGAACATTACATTTTTGAGAAATCG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
* * * **
6027 CATCATTTGGTACAAATAATCTGTCATTTAGTAAACAACTTTTGGTCTTTGGATTAAAATTTTAT
130 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTAT
*
6092 TTATGTGAGAATTGTTTCTCTC
195 TTATGTGAGAATTATTTCTCTC
* * * * * *
6114 TTAGTTCTTGGTTGCACTTCCGAACTTGTCAAACTTTTTCGAGTACTTTTATATCTTCGGTTCCT
1 TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCT
* * * *
6179 TAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCCAACATTCCATTCTC-AGGAAATCA
66 TAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGA-GAAATCG
* * * *
6243 CATCATTTGGTCCAAATAAT-TAGTCCA-TTTGTAAAAAACTTTTGATCATTGAATTAAAAAATT
130 CATCATTTGGTCCAAATAATCT-GT-CATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTT
* *
6306 ATTTAAGTGAGAATTATTTCACTC
193 ATTTATGTGAGAATTATTTCTCTC
* * * * * * * * **
6330 TAGGCTCTAGGCCGAACTTCCAAAGTT-TGCAAACTTTTTTGAGTTCTTTTATAACTTCGAATCC
1 TTGGTTCTTGGCTGAACTTTCGAACTTGT-CAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
6394 TTAAAGTATTCAAGATGATCAATTCCTTCGAGCAATTTTTCGAAAATTCCATTTTCTAGAAATCG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
* *
6459 CATCATTTGGTCCAAATAAT-TAGT-ACTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTT
130 CATCATTTGGTCCAAATAATCT-GTCA-TTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTT
* * *
6522 TTTTATGTGATAATTATTTCACTC
193 ATTTATGTGAGAATTATTTCTCTC
* * * * * **
6546 TTGGTTCTAGGCCGAACTTCCAAACTTAG-CAAACTTTTTTGAGTTCTTTTA-AATCTTTTGTTC
1 TTGGTTCTTGGCTGAACTTTCGAACTT-GTCAAACTTTTTCGAGTTCTTTTATAA-CTTCGGTTC
* * *
6609 CTTAAAGTATTCAAGACGATCCATTTCATCGAACAATTTTTC-AAGCATTCCGTTCTCTG-GAAA
64 CTTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAA-CATTCCATTCTC-GAGAAA
** * * * * *
6672 AAGCATCATTCGGTCCAAATAATCTATCATTTTGTAAACAACTTTTGGT-TCTTGGATTAGAAAT
127 TCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCT-TTGGATTAAAAAC
* *
6736 TTATTTATGCGAGAATT-GTT-TCTC
191 TTATTTATGTGAGAATTATTTCTCTC
* * * *
6760 TTGGTTCTTGGCCGAACTTCCCAACTTGTCAAACTTTTTCGAGTACTTTTATAACCTT-GGTTCC
1 TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAA-CTTCGGTTCC
* * * * * * *
6824 TTAAAGTATTCAATACGATCGA-TTCTTTCGAGCAATTTTTTGAATATTTCATTCTTGGGAAATC
65 TTAAAGTATTCAAGACGATCCATTTC-TTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATC
* * * * * *
6888 GTATCATTTGGTTCAAATAAT-TAGTCGTTTTGTAAAAAACTATCGGTCTTTGAATTAAAAACTT
129 GCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTT
*
6952 ATTTATGTGAGAATTATTTCACTC
193 ATTTATGTGAGAATTATTTCTCTC
* ** * * * *
6976 TTGGTTCTAGGCTGAACTACCAAACTT-TGAAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCC
1 TTGGTTCTTGGCTGAACTTTCGAACTTGT-CAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * * *
7040 TTAAAGTATTCAAGACGAACCATTTTTTCGAACCATTTTTCGAACATTCCGTTCTCTAGAAATCG
65 TTAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCG
* * **
7105 CATCAGTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTAT
130 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTAT
*** *
7170 TTATGTGAGAAACGTTTCCCTC
195 TTATGTGAGAATTATTTCTCTC
* *
7192 TTGATTCTTGG-TCGAACTTTCGAACTT-TCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCC
1 TTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCC
* * * * *
7255 TTAAAGTATTAAAGACGATCGA-TTCTTTCGAGTAATTTTTCGAGCATTCCATTCTCGAAAAATC
65 TTAAAGTATTCAAGACGATCCATTTC-TTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATC
* *
7319 GCATCATTTGGTCCAAATAGT-TAGTCCTTTTGTAAAAAACTT
129 GCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAAAAACTT
7361 ATTTACGTGA
Statistics
Matches: 2333, Mismatches: 465, Indels: 242
0.77 0.15 0.08
Matches are distributed among these distances:
187 5 0.00
190 20 0.01
191 4 0.00
193 67 0.03
194 108 0.05
195 14 0.01
196 10 0.00
197 4 0.00
198 8 0.00
199 3 0.00
200 12 0.01
201 9 0.00
202 16 0.01
203 8 0.00
204 9 0.00
205 15 0.01
206 11 0.00
207 15 0.01
208 15 0.01
209 76 0.03
210 19 0.01
211 128 0.05
212 54 0.02
213 7 0.00
214 332 0.14
215 165 0.07
216 890 0.38
217 243 0.10
218 66 0.03
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTCGGTTCCT
TAAAGTATTCAAGACGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATTCTCGAGAAATCGC
ATCATTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTTGGTCTTTGGATTAAAAACTTATT
TATGTGAGAATTATTTCTCTC
Found at i:5615 original size:194 final size:192
Alignment explanation
Indices: 5294--6044 Score: 674
Period size: 194 Copynumber: 3.8 Consensus size: 192
5284 GTGAGAAACG
* * * ** **
5294 TTTCTCTCTTGGTTCTTGGTCTAACTTTTGAACTTGTCAAACTTTTTCAAGTTCTTTTATTGCTT
1 TTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTT-TCAAACTTTTTCAAGTTCTTTTATAACTT
* * *** * * *
5359 CGGTTCCTTAAAGTGTTCAAGACAAT-TGCTTCTTTCG-ACCAATTTTCCGAGCATTCCATTCTC
65 CGGTTCCTTAAAGTATTCAAGACGATCAATTTC-TTCGAACAAATTTT-CGAACATTTCATTCTC
*
5422 GAGAAATCGTATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAATATATTTACGTGAGAATT
128 GAGAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAAT-TATTTACGTGAGAATT
5487 A
192 A
**
5488 TTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTTTACAAACTTTTTTGAGTTCTTTTATAACTT
1 TTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTTT-CAAACTTTTTCAAGTTCTTTTATAACTT
* * *
5553 TGGTTCCTTAAAGTATTCAAGACGATTAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCGG
65 CGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCGA
* * * *
5618 GAAATCGCATCATTTGGTCTGAATAATTTGTCATTTTGTAAACAACTTTTGGTCTTTAGATTAAA
130 GAAATCGCATCATTTGGTC--CA-AA----T-AGTTAGT---C--CTTTT-G----TA-A-AAAA
* * **
5683 TTTTATTTATGTGAGAAACA
175 TTA--TTTACGTGAGAATTA
* * *
5703 TTTCTCTCTTGGTTCTTA-GCCGAACTTCCGAACTAGTCAAACTTTTTCAAG---TTTTATAGCT
1 TTTCTCTCTTGGTTC-TAGGCCAAACTTCCGAACT-TTCAAACTTTTTCAAGTTCTTTTATAACT
* * * * * * * *
5764 TCGGTTCCTTAAA-TATT--ACATGATCAATTCCTTCGAGCAATTTTTTGAGCATTTCATACTCG
64 TCGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCG
* * * *
5826 GGAAATCGCATAATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAACTTATTCACGTGAGAATTA
129 AGAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAATTATTTACGTGAGAATTA
* *
5890 TTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTT
1 TTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTTT-CAAACTTTTTCAAGTTCTTTTATAACTT
* * * * * * * *
5955 TGGGTCCTTAAAGTATTTAAGGCGATCAATTTCTTCGAACAATTTTTCGAACATTACATTTTTGA
65 CGGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCGA
*
6020 GAAATCGCATCATTTGGTACAAATA
130 GAAATCGCATCATTTGGTCCAAATA
6045 ATCTGTCATT
Statistics
Matches: 447, Mismatches: 75, Indels: 71
0.75 0.13 0.12
Matches are distributed among these distances:
186 3 0.01
187 53 0.12
189 4 0.01
190 21 0.05
191 6 0.01
193 58 0.13
194 114 0.26
195 12 0.03
196 6 0.01
197 2 0.00
198 1 0.00
201 6 0.01
202 6 0.01
205 1 0.00
206 2 0.00
207 6 0.01
208 1 0.00
209 55 0.12
211 4 0.01
212 23 0.05
213 2 0.00
214 4 0.01
215 54 0.12
216 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (192 bp):
TTTCTCTCTTGGTTCTAGGCCAAACTTCCGAACTTTCAAACTTTTTCAAGTTCTTTTATAACTTC
GGTTCCTTAAAGTATTCAAGACGATCAATTTCTTCGAACAAATTTTCGAACATTTCATTCTCGAG
AAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGTAAAAAATTATTTACGTGAGAATTA
Found at i:6941 original size:430 final size:427
Alignment explanation
Indices: 5865--7719 Score: 1996
Period size: 432 Copynumber: 4.3 Consensus size: 427
5855 AGTCCTTTTG
* * * * * * *
5865 TAAAAACTTATTCACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACTTTGCAA
1 TAAAAATTTATTTATGTGAGAATT-GTT-TCTCTTGGTTCTTGGCCGAACTTCCGAACTTT-CAA
* * * * * *
5930 ACTTTTTCGAGTTCTTTTATAACTTTGGGTCCTTAAAGTATTTAAGGCGATCAATT-TCTTCGAA
63 ACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCT-TTCGAG
* * * *
5994 CAATTTTTCGAACATTACATTTTTGAGAAATCGCATCATTTGGTACAAATAATCT-GTCATTTAG
127 CAATTTTTCGAACATTCCATTCTTGAGAAATCGCATCATTTGGTCCAAATAAT-TAGTC-TTTTG
* * * * * * * * *
6058 TAAACAACTTTTGGTCTTTGGATTAAAATTTTATTTATGTGAGAATTGTTTCTCTCTTAGTTCTT
190 TAAAAAACTATCGGTCTTTGAATTAAAACTTT-TTTATGTGAGAATTATTTCACTCTTGGTTCTA
** * * * * * *
6123 GGTTGCACTTCCGAACTT-GTCAAACTTTTTCGAGTACTTTTATATCTTCGGTTCCTTAAAGTAT
254 GGCCGAACTTCCAAACTTAG-CAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTAT
* * * * *
6187 TCAAGACGATCAATTCCTTCGAGCAATTTTTCCAACATTCCATTCTCAGGAAATCA-CATCATTT
318 TCAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAGAAAT-AGCATCATTT
* * *
6251 GGTCCAAATAAT-TAGTCCA-TTTGTAAAAAACTTTTGATCATTGAAT
382 GGTCCAAATAATCTA-T-CATTTTGTAAAAAACTTTTGGTCTTTGGAT
* * * * * * * *
6297 TAAAAAATTATTTAAGTGAGAATTATTTCACTCTAGGCTCTAGGCCGAACTTCCAAAGTTTGCAA
1 TAAAAATTTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTCCGAACTTT-CAA
* ** * * *
6362 ACTTTTTTGAGTTCTTTTATAACTTCGAATCCTTAAAGTATTCAAGATGATCAATTCCTTCGAGC
63 ACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGC
* *
6427 AATTTTTCGAAAATTCCATT-TTCTAGAAATCGCATCATTTGGTCCAAATAATTAGTACTTTTGT
128 AATTTTTCGAACATTCCATTCTT-GAGAAATCGCATCATTTGGTCCAAATAATTAGT-CTTTTGT
* *
6491 AAAAAACTTTCGGTCTTTGAATTAAAAACTTTTTTATGTGATAATTATTTCACTCTTGGTTCTAG
191 AAAAAACTATCGGTCTTTGAATT-AAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAG
*
6556 GCCGAACTTCCAAACTTAGCAAACTTTTTTGAGTTCTTTTA-AATCTTTTGTTCCTTAAAGTATT
255 GCCGAACTTCCAAACTTAGCAAACTTTTTTGAGTTCTTTTATAA-CTTTGGTTCCTTAAAGTATT
* * ** * *
6620 CAAGACGATCCATTTCATCGAACAATTTTTC-AAGCATTCCGTTCTCTGGAAAAAGCATCATTCG
319 CAAGACGATCAATTTCTTCGAACAATTTTTCGAA-CATTCCGTTCTCAAGAAATAGCATCATTTG
*
6684 GTCCAAATAATCTATCATTTTGTAAACAACTTTTGGT-TCTTGGAT
383 GTCCAAATAATCTATCATTTTGTAAAAAACTTTTGGTCT-TTGGAT
* * *
6729 TAGAAATTTATTTATGCGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCCAACTTGTCAAAC
1 TAAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTT-TCAAAC
* *
6794 TTTTTCGAGTACTTTTATAACCTT-GGTTCCTTAAAGTATTCAATACGATCGATTCTTTCGAGCA
65 TTTTTCGAGTTCTTTTATAA-CTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCA
* * * * * *
6858 ATTTTTTGAATATTTCATTCTTGGGAAATCGTATCATTTGGTTCAAATAATTAGTCGTTTTGTAA
129 ATTTTTCGAACATTCCATTCTTGAGAAATCGCATCATTTGGTCCAAATAATTAGTC-TTTTGTAA
*
6923 AAAACTATCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGC
193 AAAACTATCGGTCTTTGAATT-AAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAGGC
* * * *
6988 TGAACTACCAAACTTTGAAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
257 CGAACTTCCAAACTTAGCAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * * * * *
7053 GACGAACCATTTTTTCGAACCATTTTTCGAACATTCCGTTCTCTAGAAATCGCATCAGTTGGTCC
322 GACGATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAGAAATAGCATCATTTGGTCC
* *
7118 AAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGAT
387 AAATAATCTATCATTTTGTAAAAAACTTTTGGTCTTTGGAT
* ** * * *
7159 TAAAATTTTATTTATGTGAGAAACGTTTCCCTCTTGATTCTTGGTCGAACTTTCGAACTTTCAAA
1 TAAAAATTTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTCCGAACTTTCAAA
* * *
7224 CTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCGATTCTTTCGAGTA
64 CTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCA
* * * *
7289 ATTTTTCGAGCATTCCATTCTCGAAAAATCGCATCATTTGGTCCAAATAGTTAGTCCTTTTGT-A
129 ATTTTTCGAACATTCCATTCTTGAGAAATCGCATCATTTGGTCCAAATAATTAGT-CTTTTGTAA
* *
7353 AAAA--A-----C------TT---A----TTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCC
193 AAAACTATCGGTCTTTGAATTAAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCC
* *
7398 AAACTTCCGAACTTTA-CAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
258 GAACTTCCAAAC-TTAGCAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* * * *
7462 GACGATTAATTTCTTCGAACAATTTTTCGAACATTTCGTTCTCAAGAAATCGCATCATTTGGTCT
322 GACGATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAGAAATAGCATCATTTGGTCC
* * * * *
7527 GAATAATTTGTCATCTTGTAAAAAACTTTTGGTCTTTAGAT
387 AAATAATCTATCATTTTGTAAAAAACTTTTGGTCTTTGGAT
* * * * * *
7568 TAAAAATTTATTTATGTGAAAAACATT-TCTCTCTTAGTTCTTGGTCGAACTTCTGAACTAGTCA
1 TAAAAATTTATTTATGTG--AGA-ATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACT-TTCA
* * * * *
7632 AACTTTTTCAAGTTCTTTTATAGCTTCGGTTCCTTAAAGTATTCAACACGATTGATTCCTTCGAG
62 AACTTTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAG
* *
7697 CAATTTTTGGAGCATTCCATTCT
127 CAATTTTTCGAACATTCCATTCT
7720 CGNNNNNNNN
Statistics
Matches: 1233, Mismatches: 160, Indels: 82
0.84 0.11 0.06
Matches are distributed among these distances:
409 223 0.18
410 86 0.07
411 4 0.00
412 1 0.00
413 1 0.00
417 2 0.00
423 1 0.00
428 1 0.00
429 1 0.00
430 377 0.31
431 134 0.11
432 391 0.32
433 11 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (427 bp):
TAAAAATTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTCCGAACTTTCAAACT
TTTTCGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCAAT
TTTTCGAACATTCCATTCTTGAGAAATCGCATCATTTGGTCCAAATAATTAGTCTTTTGTAAAAA
ACTATCGGTCTTTGAATTAAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAA
CTTCCAAACTTAGCAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACG
ATCAATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCAAGAAATAGCATCATTTGGTCCAAAT
AATCTATCATTTTGTAAAAAACTTTTGGTCTTTGGAT
Found at i:7080 original size:12 final size:13
Alignment explanation
Indices: 7055--7084 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
7045 GTATTCAAGA
7055 CGAACCATTTTTT
1 CGAACCATTTTTT
7068 CGAACCA-TTTTT
1 CGAACCATTTTTT
7080 CGAAC
1 CGAAC
7085 ATTCCGTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.37
Consensus pattern (13 bp):
CGAACCATTTTTT
Found at i:7100 original size:646 final size:645
Alignment explanation
Indices: 5865--7720 Score: 2057
Period size: 646 Copynumber: 2.9 Consensus size: 645
5855 AGTCCTTTTG
* * * * *
5865 TAAAAACTTATTCACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCAAACTTTCGAACTTTGCAA
1 TAAAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTTCGAAC-TTGCAA
* * *
5930 ACTTTTTCGAGTTCTTTTATAACTTTGGGTCCTTAAAGTATTTAAGGCGATCAATTTCTTCGAAC
65 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGACGATCAATTTCTTCGAAC
* * ** * * *
5995 AATTTTTCGAA-CATTACATT-TTTGAGAAATCGCATCATTTGGTACAAATAATCTGTCATTTAG
130 AATTTTTC-AAGCATTCCATTCTCTG-GAAAAAGCATCATTTGGTCCAAATAATCTATCATTTTG
* *
6058 TAAACAACTTTTGG-TCTTTGGATTA-AAATTTTATTTATGTGAGAATTGTTTCTCTCTTAGTTC
193 TAAACAACTTTTGGTTC-TTGGATTAGAAA-TTTATTTATGCGAGAATTG-TT-TCTCTTGGTTC
** * *
6121 TTGGTTGCACTTCCGAACTTGTCAAACTTTTTCGAGTACTTTTAT-ATCTTCGGTTCCTTAAAGT
254 TTGGCCGAACTTCCGAACTTGTCAAACTTTTTCGAGTACTTTTATAACCTT-GGTTCCTTAAAGT
* * * *
6185 ATTCAAGACGATCAATTCCTTCGAGCAATTTTTCCAACATTCCATTCTCAGGAAATCACATCATT
318 ATTCAAGACGATCAATTCTTTCGAGCAATTTTTCGAACATTTCATTCTCAGGAAATCGCATCATT
* * * *
6250 TGGTCCAAATAATTAGTCCA-TTTGTAAAAAACTTTTGATCATTGAATTAAAAAATTATTTAAGT
383 TGGTTCAAATAATTAGT-CATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAATTATTTATGT
* * * *
6314 GAGAATTATTTCACTCTAGGCTCTAGGCCGAACTTCCAAAGTTTGCAAACTTTTTTGAGTTCTTT
447 GAGAATTATTTCACTCTTGGTTCTAGGCTGAACTTCCAAACTTTGCAAACTTTTTTGAGTTCTTT
** * * *
6379 TATAACTTCGAATCCTTAAAGTATTCAAGATGATCAATTCCTTCGAGCAATTTTTCGAAAATTCC
512 TATAACTTCGGTTCCTTAAAGTATTCAAGACGAACAATTCCTTCGAACAATTTTTCGAAAATTCC
* *
6444 ATTTTCTAGAAATCGCATCATTTGGTCCAAATAAT-TAGT-ACTTTTGTAAAAAACTTTCGGTCT
577 ATTCTCTAGAAATCGCATCAGTTGGTCCAAATAATCT-GTCA-TTTTGTAAAAAACTTTCGGTCT
6507 TTGAAT
640 TTGAAT
* * *
6513 TAAAAACTTTTTTATGTGATAATTATTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTAGCAA
1 TAAAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTTCGAACTT-GCAA
* * * * *
6578 ACTTTTTTGAGTTCTTTTA-AATCTTTTGTTCCTTAAAGTATTCAAGACGATCCATTTCATCGAA
65 ACTTTTTCGAGTTCTTTTATAA-CTTTGGTTCCTTAAAGTATTAAAGACGATCAATTTCTTCGAA
* *
6642 CAATTTTTCAAGCATTCCGTTCTCTGGAAAAAGCATCATTCGGTCCAAATAATCTATCATTTTGT
129 CAATTTTTCAAGCATTCCATTCTCTGGAAAAAGCATCATTTGGTCCAAATAATCTATCATTTTGT
6707 AAACAACTTTTGGTTCTTGGATTAGAAATTTATTTATGCGAGAATTGTTTCTCTTGGTTCTTGGC
194 AAACAACTTTTGGTTCTTGGATTAGAAATTTATTTATGCGAGAATTGTTTCTCTTGGTTCTTGGC
*
6772 CGAACTTCCCAACTTGTCAAACTTTTTCGAGTACTTTTATAACCTTGGTTCCTTAAAGTATTCAA
259 CGAACTTCCGAACTTGTCAAACTTTTTCGAGTACTTTTATAACCTTGGTTCCTTAAAGTATTCAA
* * * * ** *
6837 TACGATCGATTCTTTCGAGCAATTTTTTGAATATTTCATTCTTGGGAAATCGTATCATTTGGTTC
324 GACGATCAATTCTTTCGAGCAATTTTTCGAACATTTCATTCTCAGGAAATCGCATCATTTGGTTC
* * * *
6902 AAATAATTAGTCGTTTTGTAAAAAACTATCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATT
389 AAATAATTAGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAATTATTTATGTGAGAATT
* *
6967 ATTTCACTCTTGGTTCTAGGCTGAACTACCAAACTTTGAAAACTTTTTTGAGTTCTTTTATAACT
454 ATTTCACTCTTGGTTCTAGGCTGAACTTCCAAACTTTGCAAACTTTTTTGAGTTCTTTTATAACT
* * ** * * *
7032 TTGGTTCCTTAAAGTATTCAAGACGAACCATTTTTTCGAACCATTTTTCGAACATTCCGTTCTCT
519 TCGGTTCCTTAAAGTATTCAAGACGAACAATTCCTTCGAACAATTTTTCGAAAATTCCATTCTCT
* * *
7097 AGAAATCGCATCAGTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGAT
584 AGAAATCGCATCAGTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTCGGTCTTTGAAT
* *** * * * * *
7159 T-AAAATTTTATTTATGTGAGAAACGTTTCCCTCTTGATTCTTGGTCGAACTTTCGAACTTTCAA
1 TAAAAACTTT-TTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTTCGAACTTGCAA
* * * *
7223 ACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCGA-TTCTTTCGAG
65 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGACGATCAATTTC-TTCGAA
* * * *
7287 TAATTTTTCGAGCATTCCATTCTC--GAAAAATCGCATCATTTGGTCCAAATAGT-TAGTCCTTT
129 CAATTTTTCAAGCATTCCATTCTCTGGAAAAA--GCATCATTTGGTCCAAATAATCTA-TCATTT
* * *
7349 TGTAAAAAACTTATT--TAC---G-TGAG-AA-TTA-TT-T-C----------TCTCTTGGTTCT
191 TGTAAACAACTT-TTGGTTCTTGGATTAGAAATTTATTTATGCGAGAATTGTTTCTCTTGGTTCT
* * * * *
7393 AGGCCAAACTTCCGAACTT-TACAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTA
255 TGGCCGAACTTCCGAACTTGT-CAAACTTTTTCGAGTACTTTTATAACCTTGGTTCCTTAAAGTA
* * * *
7457 TTCAAGACGATTAATT-TCTTCGAACAATTTTTCGAACATTTCGTTCTCAAGAAATCGCATCATT
319 TTCAAGACGATCAATTCT-TTCGAGCAATTTTTCGAACATTTCATTCTCAGGAAATCGCATCATT
* * * *
7521 TGG-TCTGAATAATTTGTCATCTTGTAAAAAACTTTTGGTCTTT-AGATTAAAAATTTATTTATG
383 TGGTTC-AAATAATTAGTCATTTTGTAAAAAACTTTTGGTCTTTGA-ATTAAAAAATTATTTATG
* ** * * * ** * **
7584 TGAAAAACATTTCTCTCTTAGTTCTTGG-TCGAACTTCTGAAC-TAGTCAAACTTTTTCAAGTTC
446 TGAGAATTATTTCACTCTTGGTTCTAGGCT-GAACTTCCAAACTTTG-CAAACTTTTTTGAGTTC
* * *** * * **
7647 TTTTATAGCTTCGGTTCCTTAAAGTATTCAACACGATTGATTCCTTCGAGCAATTTTTGGAGCAT
509 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGAACAATTCCTTCGAACAATTTTTCGAAAAT
7712 TCCATTCTC
574 TCCATTCTC
7721 GNNNNNNNNN
Statistics
Matches: 1033, Mismatches: 152, Indels: 69
0.82 0.12 0.06
Matches are distributed among these distances:
624 8 0.01
625 276 0.27
635 1 0.00
636 1 0.00
637 2 0.00
638 3 0.00
639 2 0.00
640 3 0.00
641 1 0.00
643 6 0.01
644 7 0.01
645 116 0.11
646 389 0.38
647 14 0.01
648 196 0.19
649 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (645 bp):
TAAAAACTTTTTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCCGAACTTTCGAACTTGCAAA
CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTAAAGACGATCAATTTCTTCGAACA
ATTTTTCAAGCATTCCATTCTCTGGAAAAAGCATCATTTGGTCCAAATAATCTATCATTTTGTAA
ACAACTTTTGGTTCTTGGATTAGAAATTTATTTATGCGAGAATTGTTTCTCTTGGTTCTTGGCCG
AACTTCCGAACTTGTCAAACTTTTTCGAGTACTTTTATAACCTTGGTTCCTTAAAGTATTCAAGA
CGATCAATTCTTTCGAGCAATTTTTCGAACATTTCATTCTCAGGAAATCGCATCATTTGGTTCAA
ATAATTAGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAAATTATTTATGTGAGAATTAT
TTCACTCTTGGTTCTAGGCTGAACTTCCAAACTTTGCAAACTTTTTTGAGTTCTTTTATAACTTC
GGTTCCTTAAAGTATTCAAGACGAACAATTCCTTCGAACAATTTTTCGAAAATTCCATTCTCTAG
AAATCGCATCAGTTGGTCCAAATAATCTGTCATTTTGTAAAAAACTTTCGGTCTTTGAAT
Found at i:7514 original size:194 final size:193
Alignment explanation
Indices: 7206--7554 Score: 495
Period size: 194 Copynumber: 1.8 Consensus size: 193
7196 TTCTTGGTCG
*
7206 AACTTTCGAACTTTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGAC
1 AACTTCCGAACTTTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGAC
* ** *
7271 GATCGATTCTTTCGAGTAATTTTTCGAGCATTCCATTCTCGAAAAATCGCATCATTTGGTCCAAA
66 GATCAATTCTTTCGAACAATTTTTCGAACATTCCATTCTCGAAAAATCGCATCATTTGGTCCAAA
* * *
7336 TAGTTAGTCCTTTTGTAAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCA
131 TAATTAGTCATCTTGTAAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCA
** * *
7399 AACTTCCGAACTTTACAAACTTTTTTGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGA
1 AACTTCCGAACTTT-CAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGA
* * * *
7464 CGATTAATT-TCTTCGAACAATTTTTCGAACATTTCGTTCTC-AAGAAATCGCATCATTTGGTCT
65 CGATCAATTCT-TTCGAACAATTTTTCGAACATTCCATTCTCGAA-AAATCGCATCATTTGGTCC
* *
7527 GAATAATTTGTCATCTTGTAAAAAACTT
128 AAATAATTAGTCATCTTGTAAAAAACTT
7555 TTGGTCTTTA
Statistics
Matches: 135, Mismatches: 18, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
193 16 0.12
194 119 0.88
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (193 bp):
AACTTCCGAACTTTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGAC
GATCAATTCTTTCGAACAATTTTTCGAACATTCCATTCTCGAAAAATCGCATCATTTGGTCCAAA
TAATTAGTCATCTTGTAAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTAGGCCA
Found at i:8279 original size:217 final size:218
Alignment explanation
Indices: 7792--9461 Score: 1745
Period size: 216 Copynumber: 7.8 Consensus size: 218
7782 NNNNNNNNNN
* * * * * *
7792 TCTTGGTTCTAGGCCAAACTTTCGAACTTTGCAAACTTTTTCGAGTTATTTTATAACTTTGGGTC
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTGCAAACTTTTTCTAGTTCTTTTATAACTTCGGTTC
* * * * * *
7857 CTTAAAGTATTTAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTACATTTTCGAGAAATC
66 CTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATC
* * * * * * *
7922 GAATCATATGGTACAAATAATCT-GTCATTTAGTAAACAACTTTTGGTCTTTGGATT-AAAATTT
131 GCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTT
*
7985 TATTTATGTGAGAATTGTTTCTC
196 TATTTATGTGAGAATTGTTTCAC
* ** * * * *
8008 TCTTGGTTCTTGGTTGCACTTCCGAAC-TTGTCAAACTTTTTCGAGTACTTTTATATCTTCGGTT
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTG-CAAACTTTTTCTAGTTCTTTTATAACTTCGGTT
*
8072 CCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCCAACATTCCATTCTCGGGAAAT
65 CCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * *
8137 TGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGTAAAAAAACTTTTGATCTTTGAATTAAAAAC
130 CGCATCATTTGGTCCAAATAATCTAGTCATTTTGT-AAAAAACTTTTGGTCTTTGAATTAAAAAC
* *
8201 TTT-TTTAAGTGAGAATTATTTCAC
194 TTTATTTATGTGAGAATTGTTTCAC
* * * * *
8225 TCTAGGCTCTAGGCGGAACTTCCAAACTTTGCAAACTTTTTCTAGTTCTTTTATAACTTAGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTGCAAACTTTTTCTAGTTCTTTTATAACTTCGGTTC
* * * * * * *
8290 TTTAAAGTATTCAAGATGATCTATTTCTTCGAACAATTTTTTGAACATTCCATTCTCGGGAAATT
66 CTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATC
* * * * *
8355 GCATCATTTGGTCAAAATAATCT-GTCATTTTGTTAACAACTTTTGGTCTAT-AGATT-AAAATT
131 GCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTTTTGGTCTTTGA-ATTAAAAACT
8417 TTATTTATGTGAGAATTGTTT--C
195 TTATTTATGTGAGAATTGTTTCAC
* * * *
8439 TCTTGGTTCTTA-GCCGAACTTTCGAAC-TTGTTAAACTTTTT-TGAGTACTTTTATAACTTCGA
1 TCTTGGTTC-TAGGCCGAACTTCCGAACTTTG-CAAACTTTTTCT-AGTTCTTTTATAACTTCGG
* * * *
8501 ATCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAAAATTCCATTTTC-TGAA
63 TTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAA
*
8565 GATCGCATCATTTGGTCCAAATAAT-TAGT-ACTTTTGTAAAAAAACTTTCGGTCTTTGAATTAA
128 -ATCGCATCATTTGGTCCAAATAATCTAGTCA-TTTTGT-AAAAAACTTTTGGTCTTTGAATTAA
* *
8628 AAACTTT-TTTATGTGATAATTATTTCAC
190 AAACTTTATTTATGTGAGAATTGTTTCAC
* * *
8656 TCTTGGTTCTAGGCCGAACTTCCAAACTTAGCAAACTTTTT-TGAGTTCTTTTA-AATCTTTGGT
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTGCAAACTTTTTCT-AGTTCTTTTATAA-CTTCGGT
* * * * * *
8719 TCCTTAAAGTATTCAAGACGATCCATTTCGTCGATCAATTTTTC-AAGCATTCCGTTCTCTGGAA
64 TCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAA-CATTCCATTCTCGGGAA
** * * * *
8783 AAAGCATCATTCGGTCCAAATAATCTA-TCATTTTGTAAACAACTTTTGGT-TCTTGGATTAGAA
128 ATCGCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTTTTGGTCT-TTGAATTAAAA
8846 A-TTTATTTATGTGAGAATTGTTT--C
192 ACTTTATTTATGTGAGAATTGTTTCAC
* * * * *
8870 TCTTGGTTCTTGGCCGAACTTTCGAAC-TTGTCAAACTTTTTCGAGTACTTTTATAACCTCGGTT
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTG-CAAACTTTTTCTAGTTCTTTTATAACTTCGGTT
* * * * *
8934 CCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCAATTTTTTGAACATTCCATGCTTGGGAAAT
65 CCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * * *
8999 CGCATCATTTGGTTCAAATAAT-TAGTCGTTTTGCAAAAAACTTTCGGTCTTTGAATTAAAAAC-
130 CGCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACT
*
9062 TTATTTATGTGAGAATTATTTCAC
195 TTATTTATGTGAGAATTGTTTCAC
* * * * * *
9086 TCTTGGTTCTAGGCTGAACTACCAAACATTGCTAACTTTTT-TGAGTTCTTTTATAACTTTGGTT
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTGCAAACTTTTTCT-AGTTCTTTTATAACTTCGGTT
* * * **
9150 CCTTTAAGTATTCAAGACG---AA------C---CATTTTTTCGAACATTCCGTTCTCTAGAAAT
65 CCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAAT
* * * * *
9203 CGCATCAATTGGTCCAAATAATCT-GTCATTTTATAAACAACTTTTGGTCTTTGGATT-AAAATT
130 CGCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACT
** *
9266 TTATTTATGTGAGAAACGTTTCCC
195 TTATTTATGTGAGAATTGTTTCAC
* * * * * *
9290 TCTTGATTCTTGGTCGAACTTTCGAACTTTTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCGAACTTTGCAAACTTTTTCTAGTTCTTTTATAACTTCGGTTC
* * * * * **
9355 CTTGAAGTATTAAAGACGATCGATTCTTTCGAGCAATTTTTCGAGCATTCCATTCTCGAAAAATC
66 CTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATC
* * * * *
9420 ACATCATTTGATCCAAATAGT-TAATCCTTTTGTAAAAAACTT
131 GCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTT
9462 ATTTACGTGA
Statistics
Matches: 1199, Mismatches: 200, Indels: 110
0.79 0.13 0.07
Matches are distributed among these distances:
203 4 0.00
204 159 0.13
205 1 0.00
207 2 0.00
213 15 0.01
214 295 0.25
215 57 0.05
216 345 0.29
217 302 0.25
218 19 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (218 bp):
TCTTGGTTCTAGGCCGAACTTCCGAACTTTGCAAACTTTTTCTAGTTCTTTTATAACTTCGGTTC
CTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATC
GCATCATTTGGTCCAAATAATCTAGTCATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTT
TATTTATGTGAGAATTGTTTCAC
Found at i:8611 original size:431 final size:429
Alignment explanation
Indices: 7792--13260 Score: 5661
Period size: 431 Copynumber: 13.0 Consensus size: 429
7782 NNNNNNNNNN
* * * * *
7792 TCTTGGTTCTAGGCCAAACTTTCGAACTTTGCAAACTTTTTCGAGTTATTTTATAACTTTGGGTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * * *
7857 CTTAAAGTATTTAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTACATTTTCGAGAAATC
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* * * *
7922 GAATCATATGGTACAAATAATCTGTCATTTAGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
** * *
7987 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTTGCACTTCCGAACTTGTCAAACTTTTTCGA
196 TTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGA
* * *
8052 GTACTTTTATATCTTCGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCCA
259 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGA
*
8117 ACATTCCATTCTCGGGAAATTGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAAACTTT
324 ACATTCCATTCTC-GGAAATCGCATCATTTGGTCCAAATAATTAGT-CTTTTGTAAAAAAACTTT
* * *
8182 TGATCTTTGAATTAAAAACTTTTTTAAGTGAGAATTATTTCAC
387 CGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* * * * *
8225 TCTAGGCTCTAGGCGGAACTTCCAAACTTTGCAAACTTTTTCTAGTTCTTTTATAACTTAGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * *
8290 TTTAAAGTATTCAAGATGATCTATTTCTTCGAACAATTTTTTGAACATTCCATTCTCGGGAAATT
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* * * *
8355 GCATCATTTGGTCAAAATAATCTGTCATTTTGTTAACAACTTTTGGTCTATAGATTAAAATTTTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
* * *
8420 TTTATGTGAGAATTGTTTCTCTTGGTTCTTAGCCGAACTTTCGAACTTGTTAAACTTTTTTGAGT
196 TTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGT
** * *
8485 ACTTTTATAACTTCGAATCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTCGAAA
261 ACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAAC
* *
8550 ATTCCATTTTCTGAAGATCGCATCATTTGGTCCAAATAATTAGTACTTTTGTAAAAAAACTTTCG
326 ATTCCATTCTCGGAA-ATCGCATCATTTGGTCCAAATAATTAGT-CTTTTGTAAAAAAACTTTCG
* * * *
8615 GTCTTTGAATTAAAAACTTTTTTATGTGATAATTATTTCAC
389 ATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* *
8656 TCTTGGTTCTAGGCCGAACTTCCAAACTTAGCAAACTTTTTTGAGTTCTTTTA-AATCTTTGGTT
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAA-CTTTGGTT
* * * *
8720 CCTTAAAGTATTCAAGACGATCCATTTCGTCGATCAATTTTTC-AAGCATTCCGTTCTCTGGAAA
65 CCTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAA-CATTCCGTTCTCGGGAAA
** * *
8784 AAGCATCATTCGGTCCAAATAATCTATCATTTTGTAAACAACTTTTGGT-TCTTGGATTAGAAA-
129 TCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT-TTGGATTA-AAAT
8847 TTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTC
192 TTTATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTC
* * *
8912 GAGTACTTTTATAACCTCGGTTCCTTAAAGTATTCAAGACGATCGATTCTTTCGAGCAATTTTTT
257 GAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC
* * * *
8977 GAACATTCCATGCTTGGGAAATCGCATCATTTGGTTCAAATAATTAGTCGTTTTG-CAAAAAACT
322 GAACATTCCATTC-TCGGAAATCGCATCATTTGGTCCAAATAATTAGTC-TTTTGTAAAAAAACT
* *
9041 TTCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCAC
385 TTCGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* * * * *
9086 TCTTGGTTCTAGGCTGAACTACCAAACATTGCTAACTTTTTTGAGTTCTTTTATAACTTTGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * **
9151 CTTTAAGTATTCAAGACGA---A------C---CATTTTTTCGAACATTCCGTTCTCTAGAAATC
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* *
9204 GCATCAATTGGTCCAAATAATCTGTCATTTTATAAACAACTTTTGGTCTTTGGATTAAAATTTTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
** * * * *
9269 TTTATGTGAGAAACGTTTCCCTCTTGATTCTTGGTCGAACTTTCGAACTTTTCAAACTTTTTCAA
196 TTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGA
* * * *
9334 GTTCTTTTATAACTTCGGTTCCTTGAAGTATTAAAGACGATCGATTCTTTCGAGCAATTTTTCGA
259 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGA
* * * *
9399 GCATTCCATTCTCGAAAAATCACATCATTTGATCC--A-AA-TAG-----T-T-----AA---TC
324 ACATTCCATTCTCG-GAAATCGCATCATTTGGTCCAAATAATTAGTCTTTTGTAAAAAAACTTTC
* * *
9446 -CT-TTTG--TAAAAAACTTATTTACGTGAGATTTATTTCTA-
388 GATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC-AC
* * * * * * * *
9484 TCTTGATTCTAGGCCAAACTTTCGAACTTTACAAAATTTTCCAAGTTCTTTTATAACTTTGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
** * * * **
9549 CACAAAGTATTCAAGACGAT-TAATTTCTTCGAATAATTTTTCGAACATTTCGTGCTCAAGAAAT
66 CTTAAAGTATTCAAGACGATCT-ATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAAT
* * * * * *
9613 CACATAATTTGGTCTAAATAATTTGTCATTTTGTAAAAAACTTTTGGTCTTTAGATTAAAATTTT
130 CGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTT
* ** * *
9678 ATTTATGTGAAAAACGTTTCTCTCTTAGTTCTTGGCCGAAC-TTCTGAACTAGTCAAACTTTTTC
195 ATTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTC-GAACTTGTCAAACTTTTTC
* * * * * *
9742 AAGTTCTTTTATAGCTTTGGTTCCTTAAAGTATTCAACACGATCGATTCCTTCGAGCAATTTTTT
257 GAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC
* * * *
9807 TAGCATTCCATTCTCGAAAGATCGCATCATTTGGTCCAAATAGTTAG-----TG-----------
322 GAACATTCCATTCTCGGAA-ATCGCATCATTTGGTCCAAATAATTAGTCTTTTGTAAAAAAACTT
* *
9856 -C--T-TTT--ATAAAAAACTTATTTACGTGAGAATTATTTCTC
386 TCGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* * * * * *
9894 TCTTGGTTCTAGGCCAAACTTTCGAACTTTACAAACTTTTTCGAGTTCTGTTATAACTTTGGGTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * *
9959 CTTAAAGTATTTAAGACGATCCATTTCTTCG----A------G--CA----GTTCTCGAGAAATC
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* * *
10008 GAATCATTTGGTACAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTAGATTAAAATTTTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
** * *
10073 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTTGCACTTTCAAACTTGTCAAACTTTTTCGA
196 TTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGA
* * * * * * * * * *
10138 ATACTTTTATATCTTTGGTTTCTTAAAGTATTCAAGACTAGCAATTCCTTTGAGGAATTTTTCCA
259 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGA
10203 ACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCATTTTGT-AAAAAACTTT
324 ACATTCCATTCTC-GGAAATCGCATCATTTGGTCCAAATAATTAGTC-TTTTGTAAAAAAACTTT
* *
10267 TGATCTTTGAATTAAAAACTTATTTACGTAAGAATTATTTCAC
387 CGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* *
10310 TCTAGGCTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * * *
10375 TTTAAACTATTCAAGATGATCTATTTCTTCGAACAATTTTTCGATCATTCCATTCTCGGGAAATT
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* *
10440 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCGTTGGATTAAAAATTTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
10505 TTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGT
196 TTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGT
* * * * * * *
10570 ACTTTTATAACTTTGATTTCTTAAATTATTCAAGACGATCGATTCCTTCGAGGAATTTTCCGAAA
261 ACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAAC
* *
10635 ATTCCATTTTCTGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAAAATTTCG
326 ATTCCATTCTC-GGAAATCGCATCATTTGGTCCAAATAATTAGT-CTTTTGTAAAAAAACTTTCG
10700 ATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
389 ATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* * * *
10741 TCTAGGCTCTAGGTCGAACTTCCAAACTTTCCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * *
10806 TTTAAAGTATTCAAGATGATCTATTTCTTCGAACAATTTTTCAAACATTCCATTCTCGGGAAATT
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* * * * * *
10871 GTATCATCTAGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTTTTTGGATTAAAAATGTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
*
10936 TTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGT
196 TTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGT
* * * * *
11001 ACTTTTATAACTTCGATTCCCTAGAGTATTCAAGACGATCGATTCTTTCGAGCAATTTTTCGAAA
261 ACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAAC
* *
11066 ATTCCATTTTCTGGAAATCGCATCATTTGGTCCAAATAACTAGTACTTTTGTAAAAAAACTTTCG
326 ATTCCATTCTC-GGAAATCGCATCATTTGGTCCAAATAATTAGT-CTTTTGTAAAAAAACTTTCG
* *
11131 -TCTTTGAATTAAAAACTTATTTACGTGATAGTTATTTCAC
389 ATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* * *
11171 TCTTGGTTCTAGGTCGAACTTCCAAACTTTGCAAACTTTTTTGAGTTCTTTTAAAACTTTGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * * * *
11236 CTTAAAGTATTCAAGACGATCCATTTCGTCGAATAATTTTTCAAACATTCTGCTCTCGGGAAA-A
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* *
11300 GCATCATTTGGTCCAAATAATATGTCATTTTGTAAACAATTTTTGGT-TCTTGGATTAAAATTTT
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT-TTGGATTAAAATTTT
* *
11364 ATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGTCGAACTTCCGAACTTGTCAAACTTTTTCGAG
195 ATTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAG
11429 TACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGA----TT----C-----TT-G--
260 TACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAA
* *
11478 ------------GGAAATCGCATCATTTGGTTCAAATAATTAGTCATTTTGT-AAAAAAGTTTCG
325 CATTCCATTCTCGGAAATCGCATCATTTGGTCCAAATAATTAGTC-TTTTGTAAAAAAACTTTCG
* * *
11530 GTCTTTGAATTAAAAACTAATTTATGTGAGAATTATTTCAC
389 ATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* * * * *
11571 TCTTGGTTCTAGGCTGAAGTACCAAACTTTGCAAACTTTTTTGAGTTCTTTTATAACTTTGGTTA
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * *
11636 CTTAAAGTATTCACA-ACGATCAATTTTTTCGAACAATTTTTTGAACATTCCATTCTCGAGAAAT
66 CTTAAAGTATTCA-AGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAAT
* * * * *
11700 CTCATCAATTGGTCCAAATAATCTGTCATTCTGTAAGCAACTTTTGGTCTTTGGATTAAAAATTT
130 CGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTT
** ** *
11765 ATTTAATGTGAGAAACGTTTCTCTCTTTTTTCTTGGTCGAACTTTCGAACTTGTCAAACTTTTTC
195 ATTT-ATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTC
* * * * * * * * *
11830 AAGTTCTTTTATAACCTCGGTTCCTTAAAGAATTCAGGACGATTGATTCTTTTGAGTAATTTTTC
257 GAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTC
* * * * *
11895 GAGCATTCCATTCTCTGGAAATCACATCATTTGATCC----AACTAG---TTAGT-------C--
322 GAACATTCCATTCTC-GGAAATCGCATCATTTGGTCCAAATAATTAGTCTTTTGTAAAAAAACTT
*
11944 -C--T-TTTG--TAAAAAACTTATTTACGTGAGAATTATTTCTA-
386 TCGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTC-AC
* * * *
11982 TCTTGGTTCTAGGCCAAACTTCCGAACTTTACAAACTTTTTTGAGTTCTTTTATAACTTTGGTTC
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * * * * *
12047 CATAAAGTATTCATGATGATCAATTTCTTCGAACAATTTTTTGAACATTTCGTTCTCCGGAAATA
66 CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
* *
12112 GCATCATTTGGTCTAAATAATCTGTCATTTTGTAAACAA-TTTTGGTCTTTAGATTAAAATTTTA
131 GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
** * * *
12176 TTTATGTGAGAAACGTTTCTCTCTTAGTTCTTGGCCGAACTTTCGAACTAGTCAAACTTTTTCAA
196 TTTATGTGAGAATTG-TT-TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGA
* * * * *
12241 GTTCTTTTATAGCTTCGGATCCTTAAAGTATTCAACATGATCGATTCCTTCGAGCAATTTTTCGA
259 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGA
*** * * * * *
12306 ACATTTTGTTCTCGAGAAATCGCATCATTTGGTACAAAAAAGCT-GTTATTTTGT-AAACAACTT
324 ACATTCCATTCTCG-GAAATCGCATCATTTGGTCCAAATAA-TTAG-TCTTTTGTAAAAAAACTT
* * * ** ** * * *
12369 TTGGTCTTTGGATTAGGATTTTATTTATGTGAGAATTGTTTCTC
386 TCGATCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
* ** * * * * * *
12413 TCTTGGTTCTTGGCTAAACTTCCGAAC-CTGTCTAACTTTTTCGAGTACTTTTATATCTTTAGTT
1 TCTTGGTTCTAGGCCGAACTTCCAAACTTTG-CAAACTTTTTCGAGTTCTTTTATAACTTTGGTT
* * * * * * * * *
12477 CCTTAAAGTATTCAAGAAGATCAAATCCTTCGAGCAATTTTCCGAACATTTCATTCTCAGGAAAT
65 CCTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAAT
* * * * ** *
12542 CGTATCATTTGGTCCAAATAAT-TAGTCCTTTTGTAAAAAACTTTCGGTCTTTAAATTAGAAA-C
130 CGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTCTTTGGATTA-AAATT
* * * * * * *
12605 TTATTTATGTGAGAATTATTTAACTCTAGGCTCTAGGCTGAACTTCCAAACTT-TGCAAACTTTT
193 TTATTTATGTGAGAATTGTTT--CTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAACTTTT
* * * * * * *
12669 TCGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTT
255 TCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTT
* * * *
12734 TCGAACATTCCATTCTCGGGAAATTGCATCATTTGGTCCAAATAATTTGTTATTTTGT-AAACAA
320 TCGAACATTCCATTCTC-GGAAATCGCATCATTTGGTCCAAATAATTAG-TCTTTTGTAAAAAAA
* * * * * *
12798 CTTTTGGT-TCTTGGATTGAAAA-TATATTTATC-TGAGAATTGTTTCTC
383 CTTTCGATCT-TTGAATTAAAAACT-TATTTA-CGTGAGAATTATTTCAC
* ** * *
12845 TCTTGGTTCTTGGCCGAACTTCTGAACTTGTG-AAACTTTTTCGAGTACTTTTATAACTTCGGTT
1 TCTTGGTTCTAGGCCGAACTTCCAAACTT-TGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTT
* * * * * ** *
12909 CCTTAAAGTATTCAAGAAGATCGATTCCTTCGAGCAA-TTTTCTAAACATTCAATTCTCAGGAAA
65 CCTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTC-GAACATTCCGTTCTCGGGAAA
* * * ** *
12973 TCGCATCATTTGGTCCAAATAAT-TAGTCCA-TTTGTAAAAAACTTTCGGTTTTTTAATTAAAAA
129 TCGCATCATTTGGTCCAAATAATCT-GT-CATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAT
* * * ** * * * *
13036 CTTATTTTATGTGAGAATTATTGCACTCTCAGTTCTAGGCCGAACTTCCAAAGTT-TGCAAACTT
192 TTTA-TTTATGTGAGAATTGTT--TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGT-CAAACTT
** * * * * * * * *
13100 TTTCTTGTTCTTATATAACTTTGGATCCTTTAAGTATTCAAGACGATCCATTTCTTCGAACAATT
253 TTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATT
* *
13165 TTTTGAACATTCCGA-TCTCGAGAAATTGCATCATTTGGTCCAAATAATCT-GTCATTTTGT-AA
318 TTTCGAACATTCC-ATTCTCG-GAAATCGCATCATTTGGTCCAAATAAT-TAGTC-TTTTGTAAA
* * * * *
13227 ACAACTTTTGGTCTTTGGATTAAAAATTTATTTA
379 AAAACTTTCGATCTTTGAATTAAAAACTTATTTA
13261 TGT
Statistics
Matches: 4350, Mismatches: 513, Indels: 346
0.84 0.10 0.07
Matches are distributed among these distances:
394 212 0.05
395 6 0.00
398 97 0.02
399 13 0.00
400 189 0.04
401 62 0.01
402 13 0.00
403 2 0.00
404 81 0.02
405 2 0.00
406 1 0.00
407 1 0.00
408 3 0.00
409 144 0.03
410 365 0.08
411 177 0.04
412 3 0.00
413 9 0.00
414 10 0.00
415 1 0.00
416 119 0.03
417 11 0.00
418 98 0.02
419 5 0.00
420 127 0.03
421 2 0.00
423 1 0.00
425 6 0.00
426 1 0.00
427 1 0.00
428 4 0.00
429 166 0.04
430 437 0.10
431 1113 0.26
432 466 0.11
433 396 0.09
434 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (429 bp):
TCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
CTTAAAGTATTCAAGACGATCTATTTCTTCGAACAATTTTTCGAACATTCCGTTCTCGGGAAATC
GCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAATTTTA
TTTATGTGAGAATTGTTTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTTCGAGT
ACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTTCGAAC
ATTCCATTCTCGGAAATCGCATCATTTGGTCCAAATAATTAGTCTTTTGTAAAAAAACTTTCGAT
CTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCAC
Found at i:9329 original size:204 final size:204
Alignment explanation
Indices: 8994--9373 Score: 485
Period size: 204 Copynumber: 1.9 Consensus size: 204
8984 CCATGCTTGG
* * * *
8994 GAAATCGCATCATTTGGTTCAAATAATTAGTCGTTTTGCAAAAAACTTTCGGTCTTTGAATTAAA
1 GAAATCGCATCAATTGGTCCAAATAATTAGTCATTTTACAAAAAACTTTCGGTCTTTGAATTAAA
** * *
9059 AACTTATTTATGTGAGAATTATTTCACTCTTGGTTCTAGGCTGAACTACCAAACATTGCTAACTT
66 AACTTATTTATGTGAGAAACATTTCACTCTTGATTCTAGGCTGAACTACCAAACATTGCAAACTT
** * * *
9124 TTTTGAGTTCTTTTATAACTTTGGTTCCTTTAAGTATTCAAGACGAACCATTTTTTCGAACATTC
131 TTTCAAGTTCTTTTATAACTTCGGTTCCTTGAAGTATTAAAGACGAACCATTTTTTCGAACATTC
9189 CGTTCTCTA
196 CGTTCTCTA
* * * *
9198 GAAATCGCATCAATTGGTCCAAATAATCT-GTCATTTTATAAACAACTTTTGGTCTTTGGATTAA
1 GAAATCGCATCAATTGGTCCAAATAAT-TAGTCATTTTACAAAAAACTTTCGGTCTTTGAATTAA
** * * * ** * * *
9262 AATTTTATTTATGTGAGAAACGTTTCCCTCTTGATTCTTGG-TCGAACTTTCGAACTTTTCAAAC
65 AAACTTATTTATGTGAGAAACATTTCACTCTTGATTCTAGGCT-GAACTACCAAACATTGCAAAC
9326 TTTTTCAAGTTCTTTTATAACTTCGGTTCCTTGAAGTATTAAAGACGA
129 TTTTTCAAGTTCTTTTATAACTTCGGTTCCTTGAAGTATTAAAGACGA
9374 TCGATTCTTT
Statistics
Matches: 147, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
203 1 0.01
204 145 0.99
205 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (204 bp):
GAAATCGCATCAATTGGTCCAAATAATTAGTCATTTTACAAAAAACTTTCGGTCTTTGAATTAAA
AACTTATTTATGTGAGAAACATTTCACTCTTGATTCTAGGCTGAACTACCAAACATTGCAAACTT
TTTCAAGTTCTTTTATAACTTCGGTTCCTTGAAGTATTAAAGACGAACCATTTTTTCGAACATTC
CGTTCTCTA
Found at i:9534 original size:194 final size:194
Alignment explanation
Indices: 9290--9655 Score: 466
Period size: 194 Copynumber: 1.9 Consensus size: 194
9280 AACGTTTCCC
* * * * * *
9290 TCTTGATTCTTGGTCGAACTTTCGAACTTTTCAAACTTTTTCAAGTTCTTTTATAACTTCGGTTC
1 TCTTGATTCTAGGCCAAACTTTCGAACTTTACAAAATTTTCCAAGTTCTTTTATAACTTCGGTTC
*** * * * *
9355 CTTGAAGTATTAAAGACGATCGA-TTCTTTCGAGCAATTTTTCGAGCATTCCATTCTCGAA-AAA
66 CACAAAGTATTAAAGACGATCAATTTC-TTCGAACAATTTTTCGAACATTCCATGCTC-AAGAAA
* * *
9418 TCACATCATTTGATCCAAATAGTTAATCCTTTTGTAAAAAACTTATTTACGTGAGATTTATTTCT
129 TCACATAATTTGATCCAAATAATTAATCATTTTGTAAAAAACTTATTTACGTGAGATTTATTTCT
9483 A
194 A
*
9484 TCTTGATTCTAGGCCAAACTTTCGAACTTTACAAAATTTTCCAAGTTCTTTTATAACTTTGGTTC
1 TCTTGATTCTAGGCCAAACTTTCGAACTTTACAAAATTTTCCAAGTTCTTTTATAACTTCGGTTC
* * * * *
9549 CACAAAGTATTCAAGACGATTAATTTCTTCGAATAATTTTTCGAACATTTCGTGCTCAAGAAATC
66 CACAAAGTATTAAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTCCATGCTCAAGAAATC
* * **
9614 ACATAATTTGGTCTAAATAATTTGTCATTTTGTAAAAAACTT
131 ACATAATTTGATCCAAATAATTAATCATTTTGTAAAAAACTT
9656 TTGGTCTTTA
Statistics
Matches: 144, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
193 2 0.01
194 139 0.97
195 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.40
Consensus pattern (194 bp):
TCTTGATTCTAGGCCAAACTTTCGAACTTTACAAAATTTTCCAAGTTCTTTTATAACTTCGGTTC
CACAAAGTATTAAAGACGATCAATTTCTTCGAACAATTTTTCGAACATTCCATGCTCAAGAAATC
ACATAATTTGATCCAAATAATTAATCATTTTGTAAAAAACTTATTTACGTGAGATTTATTTCTA
Found at i:10388 original size:216 final size:215
Alignment explanation
Indices: 9995--11473 Score: 1670
Period size: 216 Copynumber: 6.9 Consensus size: 215
9985 CTTCGAGCAG
* * *
9995 TTCTCGAGAAATCGAATCATTTGGTACAAATAATCT-GTCATTTTGTAAACAACTTTTGGTCTTT
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCATTTTGTAAACAACTTTTGGTCTTT
** * * *
10059 -AGATTAAAATTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGTTGCACTTTCAAACTT
65 GA-ATTAAAAACTTATTTATGTGAGAATTGTTTC-CTCTTGGTTCTTGGTCGAACTTCCAAACTT
* * * * * *
10123 GTCAAACTTTTTCGAATACTTTTATATCTTTGGTT-TCTTAAAGTATTCAAGACTAGCAATTCCT
128 GTCAAACTTTTTCGAGTACTTTTATAACTTTGGTTCT-TTAAAGTATTCAAGACGATCGATTTCT
* ** *
10187 TTGAGGAATTTTTCCAACATTCCA
192 TCGAACAATTTTTCAAACATTCCA
* *
10211 TTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCATTTTGTAAAAAACTTTTGATCTTTG
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCATTTTGTAAACAACTTTTGGTCTTTG
* * * * * * *
10276 AATTAAAAACTTATTTACGTAAGAATTATTTCACTCTAGGCTCTAGGCCGAACTTCCAAACTT-T
66 AATTAAAAACTTATTTATGTGAGAATTGTTTC-CTCTTGGTTCTTGGTCGAACTTCCAAACTTGT
* * * *
10340 GCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCTTTAAACTATTCAAGATGATCTATTTCTTC
130 -CAAACTTTTTCGAGTACTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGATCGATTTCTTC
* *
10405 GAACAATTTTTCGATCATTCCA
194 GAACAATTTTTCAAACATTCCA
* *
10427 TTCTCGGGAAATTGCATCATTTGGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTCGTT
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCATTTTGTAAACAACTTTTGGTCTTT
* * * * *
10491 GGATTAAAAATTTATTTATGTGAGAATTGTTT-CTCTTGGTTCTTGGCCGAACTTTCGAACTTGT
65 GAATTAAAAACTTATTTATGTGAGAATTGTTTCCTCTTGGTTCTTGGTCGAACTTCCAAACTTGT
* * *
10555 CAAACTTTTTCGAGTACTTTTATAACTTTGATT-TCTTAAATTATTCAAGACGATCGATTCCTTC
130 CAAACTTTTTCGAGTACTTTTATAACTTTGGTTCT-TTAAAGTATTCAAGACGATCGATTTCTTC
** *
10619 GAGGAATTTTCCGAAA-ATTCCA
194 GAACAATTTTTC-AAACATTCCA
* * * * * * *
10641 TTTTCTGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAAAATTTCGATCTTT
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCATTTTGT-AAACAACTTTTGGTCTTT
* * * * *
10706 GAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTAGGCTCTAGGTCGAACTTCCAAACTT-
65 GAATTAAAAACTTATTTATGTGAGAATTGTTTC-CTCTTGGTTCTTGGTCGAACTTCCAAACTTG
* * *
10770 TCCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCTATTTCTT
129 T-CAAACTTTTTCGAGTACTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGATCGATTTCTT
10835 CGAACAATTTTTCAAACATTCCA
193 CGAACAATTTTTCAAACATTCCA
* * * * *
10858 TTCTCGGGAAATTGTATCATCTAGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTTTTT
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCATTTTGTAAACAACTTTTGGTCTTT
* * *
10922 GGATTAAAAA-TGTATTTATGTGAGAATTGTTT-CTCTTGGTTCTTGG-CTGAACTTTCGAACTT
65 GAATTAAAAACT-TATTTATGTGAGAATTGTTTCCTCTTGGTTCTTGGTC-GAACTTCCAAACTT
* * ** *
10984 GTCAAACTTTTTCGAGTACTTTTATAACTTCGATTCCCTAGAGTATTCAAGACGATCGA-TTCTT
128 GTCAAACTTTTTCGAGTACTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGATCGATTTC-T
*
11048 TCGAGCAATTTTTCGAAA-ATTCCA
192 TCGAACAATTTTTC-AAACATTCCA
* * * * *
11072 TTTTCTGGAAATCGCATCATTTGGTCCAAATAACTAGT-ACTTTTGTAAAAAAAC-TTTCGTCTT
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCA-TTTTGT-AAACAACTTTTGGTCTT
* * * * *
11135 TGAATTAAAAACTTATTTACGTGATAGTTATTTCACTCTTGGTTCTAGGTCGAACTTCCAAACTT
64 TGAATTAAAAACTTATTTATGTGAGAATTGTTTC-CTCTTGGTTCTTGGTCGAACTTCCAAACTT
* * * * * *
11200 -TGCAAACTTTTTTGAGTTCTTTTAAAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCG
128 GT-CAAACTTTTTCGAGTACTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGATCGATTTCT
* **
11264 TCGAATAATTTTTCAAACATTCTG
192 TCGAACAATTTTTCAAACATTCCA
* * *
11288 CTCTCGGGAAA-AGCATCATTTGGTCCAAATAA-TATGTCATTTTGTAAACAATTTTTGGT-TCT
1 TTCTCGGGAAATCGCATCATTTGGTCCAAATAATTA-GTCATTTTGTAAACAACTTTTGGTCT-T
* ** *
11350 TGGATTAAAATTTTATTTATGTGAGAATTGTTT-CTCTTGGTTCTTGGTCGAACTTCCGAACTTG
64 TGAATTAAAAACTTATTTATGTGAGAATTGTTTCCTCTTGGTTCTTGGTCGAACTTCCAAACTTG
* *
11414 TCAAACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATT
129 TCAAACTTTTTCGAGTACTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGATCGATT
11474 CTTGGGAAAT
Statistics
Matches: 1061, Mismatches: 166, Indels: 75
0.81 0.13 0.06
Matches are distributed among these distances:
213 90 0.08
214 305 0.29
215 121 0.11
216 404 0.38
217 139 0.13
218 2 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (215 bp):
TTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCATTTTGTAAACAACTTTTGGTCTTTG
AATTAAAAACTTATTTATGTGAGAATTGTTTCCTCTTGGTTCTTGGTCGAACTTCCAAACTTGTC
AAACTTTTTCGAGTACTTTTATAACTTTGGTTCTTTAAAGTATTCAAGACGATCGATTTCTTCGA
ACAATTTTTCAAACATTCCA
Found at i:12466 original size:216 final size:216
Alignment explanation
Indices: 11952--13263 Score: 1417
Period size: 216 Copynumber: 6.1 Consensus size: 216
11942 TCCTTTTGTA
* * * * * *
11952 AAAAACTTATTTACGTGAGAATTATTTCTATCTTGGTTCTAGGCCAAACTTCCGAACTTTACAAA
1 AAAAATTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTGTGCAAA
* * * *
12017 CTTTTTTGAGTTCTTTTATAACTTTGGTTCCATAAAGTATTCATGATGATCAATTTCTTCGAACA
66 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAACA
* * * * *
12082 ATTTTTTGAACATTTCGTTCTCCG-GAAATAGCATCATTTGGTCTAAATAATCTGTCATTTTGTA
131 ATTTTTCGAACATTCCATTCT-CGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTA
*
12146 AACAA-TTTTGGTCTTTAGATT
195 AACAACTTTTGGTCTTTGGATT
* *** * * *
12167 AAAATTTTATTTATGTGAGAAACGTTTCTCTCTTAGTTCTTGGCCGAACTTTCGAACTAGT-CAA
1 AAAAATTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACT-GTGCAA
* * * * * * *
12231 ACTTTTTCAAGTTCTTTTATAGCTTCGGATCCTTAAAGTATTCAACATGATCGATTCCTTCGAGC
65 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAAC
*** * * * *
12296 AATTTTTCGAACATTTTGTTCTCGAGAAATCGCATCATTTGGTACAAAAAAGCTGTTATTTTGTA
130 AATTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTA
12361 AACAACTTTTGGTCTTTGGATT
195 AACAACTTTTGGTCTTTGGATT
** * * * ** *
12383 AGGATTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTAAACTTCCGAACCTGT-CTA
1 AAAAATTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAA-CTGTGCAA
* * * * * *
12447 ACTTTTTCGAGTACTTTTATATCTTTAGTTCCTTAAAGTATTCAAGAAGATCAAATCCTTCGAGC
65 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAAC
* * * *
12512 AATTTTCCGAACATTTCATTCTC-AGGAAATCGTATCATTTGGTCCAAATAAT-TAGTCCTTTTG
130 AATTTTTCGAACATTCCATTCTCGA-GAAATCGCATCATTTGGTCCAAATAATCT-GTCATTTTG
* * **
12575 TAAAAAACTTTCGGTCTTTAAATT
193 TAAACAACTTTTGGTCTTTGGATT
* * ** * * * * *
12599 AGAAACTTATTTATGTGAGAATTATTTAACTCTAGGCTCTAGGCTGAACTTCCAAACTTTGCAAA
1 AAAAATTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTGTGCAAA
* * *
12664 CTTTTTCGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCCATTTCTTCGAACA
66 CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAACA
* * * *
12729 ATTTTTCGAACATTCCATTCTCGGGAAATTGCATCATTTGGTCCAAATAATTTGTTATTTTGTAA
131 ATTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAA
12794 ACAACTTTTGGT-TCTTGGATT
196 ACAACTTTTGGTCT-TTGGATT
* * * * * *
12815 GAAAATATATTTATCTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTG-AA
1 AAAAATTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAAC-TGTGCAA
* * * * *
12879 ACTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCGATTCCTTCGAGC
65 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAAC
* *
12944 AA-TTTTCTAAACATTCAATTCTC-AGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCA-TT
130 AATTTTTC-GAACATTCCATTCTCGA-GAAATCGCATCATTTGGTCCAAATAATCT-GT-CATTT
* * * **
13005 TGTAAAAAACTTTCGGTTTTTTAATT
191 TGTAAACAACTTTTGGTCTTTGGATT
* * * ** * * *
13031 AAAAACTTATTTTATGTGAGAATTATTGCACTCTCAGTTCTAGGCCGAACTTCCAAAGTTTGCAA
1 AAAAATTTA-TTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTGTGCAA
** * * * * * *
13096 ACTTTTTCTTGTTCTTATATAACTTTGGATCCTTTAAGTATTCAAGACGATCCATTTCTTCGAAC
65 ACTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAAC
* *
13161 AATTTTTTGAACATTCCGA-TCTCGAGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGT
130 AATTTTTCGAACATTCC-ATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGT
13225 AAACAACTTTTGGTCTTTGGATT
194 AAACAACTTTTGGTCTTTGGATT
13248 AAAAATTTATTTATGT
1 AAAAATTTATTTATGT
Statistics
Matches: 911, Mismatches: 163, Indels: 45
0.81 0.15 0.04
Matches are distributed among these distances:
214 2 0.00
215 175 0.19
216 553 0.61
217 174 0.19
218 7 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
AAAAATTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTAGGCCGAACTTCCGAACTGTGCAAA
CTTTTTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCAATTCCTTCGAACA
ATTTTTCGAACATTCCATTCTCGAGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAA
ACAACTTTTGGTCTTTGGATT
Found at i:12967 original size:432 final size:429
Alignment explanation
Indices: 11953--13261 Score: 1673
Period size: 432 Copynumber: 3.0 Consensus size: 429
11943 CCTTTTGTAA
* * * *
11953 AAAACTTATTTA-CGTGAGAATTATTTCTATCTTGGTTCTAGGCCAAACTTCCGAACTT-TACAA
1 AAAATTTATTTATC-TGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGT-CAA
* * * * * * *
12016 ACTTTTTTGAGTTCTTTTATAACTTTGGTTCCATAAAGTATTCATGATGATCAATTTCTTCGAAC
64 ACTTTTTCGAGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTCGAGC
* * * * * *
12081 AATTTTTTGAACATTTCGTTCTCCGGAAATAGCATCATTTGGTCTAAATAATCT-GTCATTTTGT
129 AATTTTCTGAACATTTCATTCTCAGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCTTTTGT
* * * * *** * *
12145 AAACAA-TTTTGGTCTTTAGATTAAAATTTTATTTATGTGAGAAACGTTTCTCTCTTAGTTCTTG
193 AAAAAACTTTCGGTCTTTAAATTAAAA-CTTATTTATGTGAGAATTATTTCACTC-TAGTTCTAG
* * * * * * *
12209 GCCGAACTTTCGAAC-TAGTCAAACTTTTTCAAGTTCTTTTATAGCTTCGGATCCTTAAAGTATT
256 GCCGAACTTCCAAACTTTG-CAAACTTTTTCAAGTTCTTTTATAACTTTGGTTCTTTAAAGTATT
* * * * *** *
12273 CAACATGATCGATTCCTTCGAGCAATTTTTCGAACATTTTGTTCTCGAGAAATCGCATCATTTGG
320 CAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAAATTGCATCATTTGG
* * *
12338 TACAAAAAAGCTGTTATTTTGTAAACAACTTTTGGTCTTTGGATT
385 TCCAAATAATCTGTTATTTTGTAAACAACTTTTGGTCTTTGGATT
* * * * * *
12383 AGGATTTTATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTAAACTTCCGAACCTGTCTAA
1 A-AAATTTATTTATCTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGTCAAA
* * *
12448 CTTTTTCGAGTACTTTTATATCTTTAGTTCCTTAAAGTATTCAAGAAGATCAAATCCTTCGAGCA
65 CTTTTTCGAGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTCGAGCA
* *
12513 ATTTTCCGAACATTTCATTCTCAGGAAATCGTATCATTTGGTCCAAATAATTAGTCCTTTTGTAA
130 ATTTTCTGAACATTTCATTCTCAGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAA
* *
12578 AAAACTTTCGGTCTTTAAATTAGAAACTTATTTATGTGAGAATTATTTAACTCTAGGCTCTAGGC
195 AAAACTTTCGGTCTTTAAATTA-AAACTTATTTATGTGAGAATTATTTCACTCTA-GTTCTAGGC
* *
12643 TGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAA
258 CGAACTTCCAAACTTTGCAAACTTTTTCAAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAA
*
12708 GATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGGGAAATTGCATCATTTGGTCC
323 GATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAAATTGCATCATTTGGTCC
*
12773 AAATAATTTGTTATTTTGTAAACAACTTTTGGT-TCTTGGATT
388 AAATAATCTGTTATTTTGTAAACAACTTTTGGTCT-TTGGATT
* * * *
12815 GAAAATATATTTATCTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCTGAACTTGTGAAA
1 -AAAATTTATTTATCTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGTCAAA
* *
12880 CTTTTTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGAAGATCGATTCCTTCGAGCA
65 CTTTTTCGAGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTCGAGCA
* *
12945 ATTTTCTAAACA-TTCAATTCTCAGGAAATCGCATCATTTGGTCCAAATAATTAGTCCATTTGTA
130 ATTTTCTGAACATTTC-ATTCTCAGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTA
* * *
13009 AAAAACTTTCGGTTTTTTAATTAAAAACTTATTTTATGTGAGAATTATTGCACTCTCAGTTCTAG
194 AAAAACTTTCGGTCTTTAAATT-AAAACTTA-TTTATGTGAGAATTATTTCACTCT-AGTTCTAG
* ** * *
13074 GCCGAACTTCCAAAGTTTGCAAACTTTTTCTTGTTCTTATATAACTTTGGATCCTTT-AAGTATT
256 GCCGAACTTCCAAACTTTGCAAACTTTTTCAAGTTCTTTTATAACTTTGG-TTCTTTAAAGTATT
* *
13138 CAAGACGATCCATTTCTTCGAACAATTTTTTGAACATTCCGA-TCTCGAGAAATTGCATCATTTG
320 CAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCC-ATTCTCGAGAAATTGCATCATTTG
*
13202 GTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATT
384 GTCCAAATAATCTGTTATTTTGTAAACAACTTTTGGTCTTTGGATT
13248 AAAAATTTATTTAT
1 -AAAATTTATTTAT
13262 GT
Statistics
Matches: 764, Mismatches: 98, Indels: 31
0.86 0.11 0.03
Matches are distributed among these distances:
430 2 0.00
431 169 0.22
432 385 0.50
433 200 0.26
434 8 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (429 bp):
AAAATTTATTTATCTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCCGAACTTGTCAAAC
TTTTTCGAGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTCGAGCAA
TTTTCTGAACATTTCATTCTCAGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGTAAA
AAACTTTCGGTCTTTAAATTAAAACTTATTTATGTGAGAATTATTTCACTCTAGTTCTAGGCCGA
ACTTCCAAACTTTGCAAACTTTTTCAAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGAT
GATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAAATTGCATCATTTGGTCCAAA
TAATCTGTTATTTTGTAAACAACTTTTGGTCTTTGGATT
Done.