Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004963.1 Kokia drynarioides strain JFW-HI SEQ_118691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1783
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Found at i:799 original size:216 final size:215
Alignment explanation
Indices: 414--1783 Score: 1565
Period size: 216 Copynumber: 6.3 Consensus size: 215
404 TTTTTTGAAC
* * ** * *
414 ATCGCATCA-TTGGTCCAAATAACTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCCAAATAACT-GTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * ** *
478 TTATTTACGTGAGAATTGTTTCACTCTTGGTTATAGGCTGAACTAACAAACTTTGCAAATTTTTT
65 TTATTTATGTGAGAATTGTTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTT
* * * ** *
543 CGAGTTCTTTTACAACTTTGGCTCCTTAAAGTATTCAAGACGATCTATTTTTTCGAACAATTTTT
130 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTC
*
608 TGAACATTCCGTTCTCGAGAA
195 TGAACATTCCATTCTCGAGAA
*
629 ATCGCATCATTAGGTCCAAATAAGCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
** * * * * * *
694 TTATTTATGTGAGAAACGTTTCTCTCTTTGTTCTTGGCCGAACTTTCGAAC-TAGTCAAACTTTT
65 TTATTTATGTGAGAATTGTTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTG-CAAACTTTT
* * * * * *
758 TCAAGTTCTTTTATAGCTTCGGTTCCTTAGAGTATTCAAGACAATCGATTCCTTC-AAGCAATTT
129 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA-CAATTT
* *
822 TCTGAGCATTCCATTCTCGGGAA
193 TCTGAACATTCCATTCTCGAGAA
* * *
845 ATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTTTTTGGATTAAAATT
1 ATCGCATCATTTGGTCCAAATAA-CTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * * * * *
910 TTATTTCTGTGAGAATTGTTTCTCTATTGGTTC-ATGGCTGAACTTCCGAACTTTTCAAACTTTG
65 TTATTTATGTGAGAATTGTTTCACTCTTGGTTCTA-GGCCGAACTTCCAAACTTTGCAAACTTTT
* * * * * * *
974 ACGAGTACTTTTATATCTTTAGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTCGAGCAATTTT
129 TCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTT
*
1039 CCGAACATTCCATTCTC-AGGAA
194 CTGAACATTCCATTCTCGA-GAA
* * * * * * * *
1061 ATCGTATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACCTTCGGTCTTTGAATTAAAAAC
1 ATCGCATCATTTGGTCCAAATAACT-GTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
* * * *
1126 TTATTTATGTGAGAATTATTTCACTCTAGGCTCTAGGCTGAACTTCCAAACTTTGCAAACTTTTT
65 TTATTTATGTGAGAATTGTTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTT
* * *
1191 CGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTT-
130 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTC
*
1255 TCGAACATTCCATTCTCGGGAA
195 T-GAACATTCCATTCTCGAGAA
* * *
1277 ATTGCATCATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGT-TCTTGGATTAAAAA
1 ATCGCATCATTTGGTCCAAATAA-CTGTCATTTTGTAAACAACTTTTGGTCT-TTGGATTAAAAA
* * * *
1341 TATATTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTG-AAACTTT
64 TTTATTTATGTGAGAATTGTTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTT-TGCAAACTTT
* * * *
1405 TTCGAGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTT
128 TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTT
* * *
1470 TCTAAACATTCAATTCTCGGGAA
193 TCTGAACATTCCATTCTCGAGAA
* * * **
1493 ATCGCATCATTTGGTCCAAATAATTAGTCCA-TTTGTAAA-AACTTTCGGTTTTTTAATTAAAAA
1 ATCGCATCATTTGGTCCAAATAACT-GT-CATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAA
* * * * ** *
1556 CTTATTTTACGTGAGAATTATTGCACTCTCAGTTCTAGGCCGAACTTCCAAAGTTTGCAAACTTT
64 TTTA-TTTATGTGAGAATTGTTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTT
** * * * *
1621 TTCTTGTTCTTATATAACTTTGGATCCTTTAAGTATTCAAGACGATCCATTTCTTCGAACAATTT
128 TTCGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTT
* *
1686 TTTGAACATTCTGA-TCTCGAGAA
193 TCTGAACATTC-CATTCTCGAGAA
*
1709 ATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
1 ATCGCATCATTTGGTCCAAATAA-CTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAAT
1774 TTATTTATGT
65 TTATTTATGT
Statistics
Matches: 971, Mismatches: 159, Indels: 49
0.82 0.13 0.04
Matches are distributed among these distances:
215 42 0.04
216 893 0.92
217 36 0.04
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (215 bp):
ATCGCATCATTTGGTCCAAATAACTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATT
TATTTATGTGAGAATTGTTTCACTCTTGGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTC
GAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTCT
GAACATTCCATTCTCGAGAA
Found at i:1658 original size:648 final size:639
Alignment explanation
Indices: 5--1783 Score: 2154
Period size: 648 Copynumber: 2.8 Consensus size: 639
1 ATCT
* * * * *
5 CATCATTTGGTCCAAATAATTAGTCT-TTTTGTAAAAAACATTCGGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCCAAATAATTTGT-TATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAA-TTA
* * * * * *
69 TTTACGTGATAATTATTTCACTCTTAGTTCTAGGCCGAACTTCCAAACTT-TGCAAACTTTTTCG
64 TTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCGAACTTCCGAACTTGTG-AAACTTTTTCG
* * * * *
133 AGTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCGTCGAACAACTTTTC-
128 AGTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAA-TTTTCT
197 GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTT
192 GAACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTT
* * * * *
262 TTGGTTCTTGGATTAAAATC-CATTTATGTGAGAATTGTT-TCTCTTGGTTCTTGGCCGAAATT-
257 TTGGTTTTTGGATTAAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTAGGCCGAACTTC
* *
324 CAGAACTTGTCAAACTTTCTCGAGTACGTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
322 CA-AATTTG-CAAACTTTCTCGAGTAC-TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * * *
389 GATTCCTT----AA---TGCA-ATT--TT-T-TGAACATCGCATCA-TTGGTCCAAATAACTAGT
384 AATTCCTTCGACAATTTTGAACATTCATTCTCGGAA-ATCGCATCATTTGGTCCAAATAATTAGT
* * * *
441 CCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCACTCTT
448 CCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTA
* *
506 GGTTATAGGCTGAACTAACAAACTTTGCAAATTTTTTCGAGTTCTTTTACAACTTTGGCTCCTTA
513 GGCTATAGGCTGAACTAACAAACTTTGCAAACTTTTTCGAGTTCTTTTACAACTTTGGCTCCTTA
* * * *
571 AAGTATTCAAGACGATCTATTTTTTCGAACAATTTTTTGAACATTCCGTTCTCGAGAAATCG
578 AAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAAATCG
* ** *
633 CATCATTAGGTCCAAATAAGCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTAT
1 CATCATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAA-TTAT
** * * * * *
698 TTATGTGAGAAACGTTTCTCTCTTTGTTCTTGGCCGAACTTTCGAACTAGTCAAACTTTTTCAAG
65 TTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCGAACTTCCGAACTTGTGAAACTTTTTCGAG
* * * * * *
763 TTCTTTTATAGCTTCGGTTCCTTAGAGTATTCAAGACAATCGATTCCTTCAAGCAATTTTCTGAG
130 TACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTCTGAA
*
828 CATTCCATTCTCGGGAAATTGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTG
195 CATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTG
* * *
893 GTTTTTGGATTAAAATTTTATTT-CTGTGAGAATTGTTTCTCTATTGGTTC-ATGGCTGAACTTC
260 GTTTTTGGATTAAAATCTTATTTAC-GTGAGAATTG-TTCTCTCTTGGTTCTA-GGCCGAACTTC
* * ** * * *
956 CGAACTTTTCAAACTTTGACGAGTACTTTTATATCTTTAGTTCCTTAAAGTATTCAAGAAGATCA
322 C-AAATTTGCAAACTTTCTCGAGTAC-TTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCA
*
1021 ATTCCTTCGAGCAATTTTCCGAACATTCCATTCTCAGGAAATCGTATCATTTGGTCCAAATAATT
385 ATTCCTTCGA-CAATTTT--GAACATT-CATTCTC-GGAAATCGCATCATTTGGTCCAAATAATT
*
1086 AGTCCTTTTGTAAAAAACCTTCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACT
445 AGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACT
* ** * * *
1151 CTAGGCTCTAGGCTGAACTTCCAAACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCT
510 CTAGGCTATAGGCTGAACTAACAAACTTTGCAAACTTTTTCGAGTTCTTTTACAACTTTGGCTCC
* * *
1216 TTAAAGTATTCAAGATGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGGGAAATTG
575 TTAAAGTATTCAAGACGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAAATCG
1281 CATCATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGT-TCTTGGATTAAAAATATA
1 CATCATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCT-TTGGATTAAAAAT-TA
*
1345 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTGAAACTTTTTCGA
64 TTTATGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCGAACTTCCGAACTTGTGAAACTTTTTCGA
*
1410 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTCTAA
129 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTCTGA
*
1475 ACATTCAATTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCA-TTTGTAAA-AACTT
194 ACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCT-GT-CATTTTGTAAACAACTT
* ** * * * **
1537 TCGGTTTTTTAATTAAAAACTTATTTTACGTGAGAATTATTGCACTCTCAGTTCTAGGCCGAACT
257 TTGGTTTTTGGATTAAAATCTTA-TTTACGTGAGAATTGTT-CTCTCTTGGTTCTAGGCCGAACT
* ** * * *
1602 TCCAAAGTTTGCAAACTTTTTCTTGTTCTTATATAACTTTGGATCCTTTAAGTATTCAAGACGAT
320 TCCAAA-TTTGCAAACTTTCTCGAGTACTT-TATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* * *
1667 CCATTTCTTCGAACAATTTTTTGAACATTC-TGATCTCGAGAAATTGCATCATTTGGTCCAAATA
383 CAATTCCTTCG-ACAA--TTTTGAACATTCAT--TCTCG-GAAATCGCATCATTTGGTCCAAATA
* * * * *
1731 ATCT-GTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTATTTATGT
442 AT-TAGTCCTTTTGTAAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTATGT
Statistics
Matches: 975, Mismatches: 131, Indels: 70
0.83 0.11 0.06
Matches are distributed among these distances:
627 5 0.01
628 231 0.24
629 15 0.02
630 2 0.00
631 73 0.07
632 4 0.00
633 1 0.00
636 2 0.00
639 1 0.00
641 2 0.00
642 3 0.00
645 2 0.00
646 2 0.00
647 42 0.04
648 580 0.59
649 6 0.01
650 4 0.00
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (639 bp):
CATCATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTATT
TATGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCGAACTTCCGAACTTGTGAAACTTTTTCGAGT
ACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTCTGAAC
ATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGG
TTTTTGGATTAAAATCTTATTTACGTGAGAATTGTTCTCTCTTGGTTCTAGGCCGAACTTCCAAA
TTTGCAAACTTTCTCGAGTACTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCT
TCGACAATTTTGAACATTCATTCTCGGAAATCGCATCATTTGGTCCAAATAATTAGTCCTTTTGT
AAAAAACTTTCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTAGGCTATAG
GCTGAACTAACAAACTTTGCAAACTTTTTCGAGTTCTTTTACAACTTTGGCTCCTTAAAGTATTC
AAGACGATCCATTTCTTCGAACAATTTTTCGAACATTCCATTCTCGAGAAATCG
Found at i:1781 original size:432 final size:427
Alignment explanation
Indices: 5--1783 Score: 1925
Period size: 432 Copynumber: 4.2 Consensus size: 427
1 ATCT
* * * * * *
5 CATCATTTGGTCCAAATAAT-TAGTCTTTTTGTAAAAAACATTCGGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTA
* * * * * * * *
69 TTTACGTGATAATTATTTCACTCTTAGTTCTAGGCCGAACTTCCAAACTTTGCAAACTTTTTCGA
65 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAACTTTG-AAACTTTTTCGA
* * * *
134 GTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTTCGTCGAACAACTTTTC-G
129 GTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAA-TTTTCTG
198 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATCT-GT-CATTTTGTAAACAACT
193 AACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAAT-TAGTCCA-TTTGTAAA-AACT
* * * * * * * * *
261 TTTGGT-TCTTGGATTAAAATC-CATTTATGTGAGAATTGTTTCTCT-TGGTTCTTGGCCGAAAT
255 TTCGGTCT-TTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTAGTTCTAGGCCGAACT
* * * * * * *
323 T-CAGAACTTGTCAAACTTTCTCGAGTACGTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGA
319 TCCA-AATTTG-CAAACTTTTTCAAGTTCTTTTATAACTTTGG-TCCTTTAAGTATTCAAGACGA
* *
387 TCGATTCCTT--AATGCAATTTTTTG-A-A---CA---TC--------G
381 TCCATTTCTTCGAA--CAATTTTTTGAACATTCCATTCTCGGGAAATTG
* * ** * *
418 CATCA-TTGGTCCAAATAA-CTAGTCCTTTTGTAAAAAACTTTCAGTCTTTGAATTAAAAACTTA
1 CATCATTTGGTCCAAATAATCT-GTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTA
* * * * ** * *
481 TTTACGTGAGAATTGTTTCACTCTTGGTTATAGGCTGAACTAACAAACTTTGCAAATTTTTTCGA
65 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAACTTTG-AAACTTTTTCGA
* * * * ** * *
546 GTTCTTTTACAACTTTGGCTCCTTAAAGTATTCAAGACGATCTATTTTTTCGAACAATTTTTTGA
129 GTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTCTGA
* * * *
611 ACATTCCGTTCTCGAGAAATCGCATCATTAGGTCCAAATAAGCT-GT-CATTTTGTAAACAACTT
194 ACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAA-TTAGTCCA-TTTGTAAA-AACTT
* * * *** * * *
674 TTGGTCTTTGGATTAAAAATTTATTTATGTGAGAAACGTTTCTCTCTTTGTTCTTGGCCGAACTT
256 TCGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTC-TAGTTCTAGGCCGAACTT
* * * * * * *
739 TCGAACTAGTCAAACTTTTTCAAGTTCTTTTATAGCTTCGGTTCC-TTAGAGTATTCAAGACAAT
320 CCAAATTTG-CAAACTTTTTCAAGTTCTTTTATAACTTTGG-TCCTTTA-AGTATTCAAGACGAT
* * * *
803 CGATTCCTTC-AAGCAATTTTCTGAGCATTCCATTCTCGGGAAATTG
382 CCATTTCTTCGAA-CAATTTTTTGAACATTCCATTCTCGGGAAATTG
* *
849 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTTTTTGGATTAAAATTTTAT
1 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTAT
* * * * **
914 TTCTGTGAGAATTGTTTCTCTATTGGTTCATGGCTGAACTTCCGAACTTTTCAAACTTTGACGAG
66 TTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAAC-TTTGAAACTTTTTCGAG
* * * *
979 TACTTTTATATCTTTAGTTCCTTAAAGTATTCAAGAAGATCAATTCCTTCGAGCAATTTTCCGAA
130 TACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTCTGAA
* * * *
1044 CATTCCATTCTCAGGAAATCGTATCATTTGGTCCAAATAATTAGTCCTTTTGTAAAAAACCTTCG
195 CATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCATTTGT-AAAAACTTTCG
* *
1109 GTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTAGGCTCTAGGCTGAACTTCCA
259 GTCTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTA-GTTCTAGGCCGAACTTCCA
* * *
1174 AACTTTGCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCTTTAAAGTATTCAAGATGATCCAT
323 AA-TTTGCAAACTTTTTCAAGTTCTTTTATAACTTTGGTCCTTT-AAGTATTCAAGACGATCCAT
*
1239 TTCTTCGAACAATTTTTCGAACATTCCATTCTCGGGAAATTG
386 TTCTTCGAACAATTTTTTGAACATTCCATTCTCGGGAAATTG
* * *
1281 CATCATTTGGTCCAAATAATTTGTTATTTTGTAAACAACTTTTGGT-TCTTGGATTAAAAATATA
1 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCT-TTGGATTAAAAATTTA
*
1345 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTGAAACTTTTTCGA
65 TTTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAACTT-TGAAACTTTTTCGA
* * *
1410 GTACTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCGATTCCTTCGAGCAATTTTCTAA
129 GTACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTCTGA
*
1475 ACATTCAATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCATTTGTAAAAACTTTCG
194 ACATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCATTTGTAAAAACTTTCG
* * * *
1540 GTTTTTTAATTAAAAACTTATTTTACGTGAGAATTATTGCACTCTCAGTTCTAGGCCGAACTTCC
259 GTCTTTGAATTAAAAACTTA-TTTATGTGAGAATTATTTCACTCT-AGTTCTAGGCCGAACTTCC
** *
1605 AAAGTTTGCAAACTTTTTCTTGTTCTTATATAACTTTGGATCCTTTAAGTATTCAAGACGATCCA
322 AAA-TTTGCAAACTTTTTCAAGTTCTTTTATAACTTTGG-TCCTTTAAGTATTCAAGACGATCCA
* *
1670 TTTCTTCGAACAATTTTTTGAACATTCTGA-TCTCGAGAAATTG
385 TTTCTTCGAACAATTTTTTGAACATTC-CATTCTCGGGAAATTG
1713 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTAT
1 CATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTAT
1778 TTATGT
66 TTATGT
Statistics
Matches: 1173, Mismatches: 149, Indels: 69
0.84 0.11 0.05
Matches are distributed among these distances:
411 4 0.00
412 238 0.20
413 27 0.02
414 2 0.00
415 85 0.07
416 3 0.00
417 1 0.00
420 2 0.00
423 2 0.00
431 41 0.03
432 746 0.64
433 22 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (427 bp):
CATCATTTGGTCCAAATAATCTGTCATTTTGTAAACAACTTTTGGTCTTTGGATTAAAAATTTAT
TTATGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTCCGAACTTTGAAACTTTTTCGAGT
ACTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTCTGAAC
ATTCCATTCTCGGGAAATCGCATCATTTGGTCCAAATAATTAGTCCATTTGTAAAAACTTTCGGT
CTTTGAATTAAAAACTTATTTATGTGAGAATTATTTCACTCTAGTTCTAGGCCGAACTTCCAAAT
TTGCAAACTTTTTCAAGTTCTTTTATAACTTTGGTCCTTTAAGTATTCAAGACGATCCATTTCTT
CGAACAATTTTTTGAACATTCCATTCTCGGGAAATTG
Done.