Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004986.1 Kokia drynarioides strain JFW-HI SEQ_118733, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1903
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39


Found at i:1064 original size:20 final size:19

Alignment explanation


    Indices: 1036--1093  Score: 64
    Period size: 20  Copynumber: 2.9  Consensus size: 19

       1026 TTTATTTTTT

                               
       1036 AAAAATATTAATTACTATA
          1 AAAAATATTAATTACTATA

                         *  *    
       1055 AAAAATTATTAA-CACAATAA
          1 AAAAA-TATTAATTACTAT-A

                               
       1075 TAAAAATATTAATTACTAT
          1 -AAAAATATTAATTACTAT

       1094 TTTTAAAAAA


Statistics
Matches: 31,  Mismatches: 4, Indels: 6
        0.76            0.10        0.15

Matches are distributed among these distances:
  19    9  0.29
  20   13  0.42
  21    9  0.29

ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34


Consensus pattern (19 bp):   
AAAAATATTAATTACTATA
Done.