Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004991.1 Kokia drynarioides strain JFW-HI SEQ_118744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18238
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Found at i:648 original size:28 final size:30
Alignment explanation
Indices: 599--655 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 30
589 GAGGTTCCTA
599 AACTGTCCAAAAATTACCA-TTTTACCCCCG
1 AACTGTCCAAAAATTA-CATTTTTACCCCCG
629 AACT-TCCAAAAATCT-CATTTTTACCCC
1 AACTGTCCAAAAAT-TACATTTTTACCCC
656 AAAATTACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 2 0.08
29 18 0.72
30 5 0.20
ACGTcount: A:0.33, C:0.33, G:0.04, T:0.30
Consensus pattern (30 bp):
AACTGTCCAAAAATTACATTTTTACCCCCG
Found at i:728 original size:49 final size:49
Alignment explanation
Indices: 605--1077 Score: 419
Period size: 59 Copynumber: 9.0 Consensus size: 49
595 CCTAAACTGT
*
605 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCTCATTTTTACC
1 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTACC
*
654 CC-AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTAACC
1 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTACC
** * *
702 CCAAAAATTACCATTTTATTCTCGAACTTCCAAAAATCCTATTTTTACC
1 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTACC
* * *
751 CCAAAAATTACTATTTTACCCCCGAACTTCAAAAAACCCCATTTTTTACCCCGAACC
1 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCA-TTTTT-------ACC
* *
808 TTCCAAAAATTACCATTTTACCCTCAAACTTCCAAAAATCCCATTTTTAACCTCGAAC
1 --CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTT-A---C---C
**
866 CTTCTAAAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCATTTTTACC
1 C--C-AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTACC
* * * * *
918 CC-AAAATTACCATTTTACTCTCGGACTTCCAAAAAACTCATTTTTTACC
1 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCA-TTTTTACC
* * * *
967 CTAAAATTTACCATTTTACCCCCAAACTTCCAAAACTCCCATTTTTTACCCCCAACC
1 CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCA-TTTTT-------ACC
* * *
1024 TTCCAAAAATTACCATTTTACCCCTGAAGTTCCAAAAATCTCATTTTTAACC
1 --CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTT-ACC
1076 CC
1 CC
1078 GAAACATCCA
Statistics
Matches: 349, Mismatches: 44, Indels: 61
0.77 0.10 0.13
Matches are distributed among these distances:
48 77 0.22
49 86 0.25
50 44 0.13
52 8 0.02
55 2 0.01
56 1 0.00
57 6 0.02
58 13 0.04
59 112 0.32
ACGTcount: A:0.34, C:0.32, G:0.02, T:0.32
Consensus pattern (49 bp):
CCAAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTACC
Found at i:773 original size:21 final size:20
Alignment explanation
Indices: 731--772 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
721 TCTCGAACTT
*
731 CCAAAAATCCTATTTTTACC
1 CCAAAAATACTATTTTTACC
751 CCAAAAATTACTA-TTTTACC
1 CCAAAAA-TACTATTTTTACC
771 CC
1 CC
773 CGAACTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (20 bp):
CCAAAAATACTATTTTTACC
Found at i:800 original size:30 final size:29
Alignment explanation
Indices: 764--919 Score: 129
Period size: 29 Copynumber: 5.3 Consensus size: 29
754 AAAATTACTA
*
764 TTTTACCCCCGAACTTCAAAAAACCCCATT
1 TTTTACCCCCGAACTTCAAAAAATCCCA-T
* *
794 TTTTA-CCCCGAACCTTCCAAAAATTACCA-
1 TTTTACCCCCGAA-CTT-CAAAAAATCCCAT
* * *
823 TTTTACCCTCAAACTTCCAAAAATCCCAT
1 TTTTACCCCCGAACTTCAAAAAATCCCAT
* * * *
852 TTTTAACCTCGAACCTTCTAAAAATTACCA-
1 TTTTACCCCCGAA-CTTC-AAAAAATCCCAT
** *
882 TTTTACCCCTAAACTTCCAAAAATCCCAT
1 TTTTACCCCCGAACTTCAAAAAATCCCAT
911 TTTTACCCC
1 TTTTACCCC
920 AAAATTACCA
Statistics
Matches: 99, Mismatches: 20, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
28 17 0.17
29 39 0.39
30 26 0.26
31 17 0.17
ACGTcount: A:0.33, C:0.34, G:0.02, T:0.31
Consensus pattern (29 bp):
TTTTACCCCCGAACTTCAAAAAATCCCAT
Found at i:965 original size:216 final size:216
Alignment explanation
Indices: 656--1103 Score: 652
Period size: 216 Copynumber: 2.1 Consensus size: 216
646 TTTTTACCCC
* *
656 AAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTAACCCCAAAAATTACCATTTTAT
1 AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTAACCCCAAAAATTACCATTTTAC
* * *
721 TCTCGAACTTCCAAAAATCCTATTTTTACCCCAAAAATTACTATTTTACCCCCGAACTTCAAAAA
66 TCTCGAACTTCCAAAAATCATATTTTTACCCCAAAAATTACCATTTTACCCCCAAACTTC-AAAA
*
786 AC-CCCATTTTTTACCCCGAACCTTCCAAAAATTACCATTTTA-CCCTCAAACTTCCAAAAATCC
130 ACTCCCATTTTTTACCCCCAACCTTCCAAAAATTACCATTTTACCCCT-AAACTTCCAAAAATCC
* * * *
849 CATTTTTAACCTCGAACCTTCTA
194 CATTTTTAACCCCGAAACATCCA
* *
872 AAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCATTTTTACCCC-AAAATTACCATTTTAC
1 AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTAACCCCAAAAATTACCATTTTAC
* * * *
936 TCTCGGACTTCCAAAAAACTCAT-TTTTTACCCTAAAATTTACCATTTTACCCCCAAACTTCCAA
66 TCTCGAACTTCC-AAAAA-TCATATTTTTACCCCAAAAATTACCATTTTACCCCCAAACTTCAAA
* * *
1000 AACTCCCATTTTTTACCCCCAACCTTCCAAAAATTACCATTTTACCCCTGAAGTTCCAAAAATCT
129 AACTCCCATTTTTTACCCCCAACCTTCCAAAAATTACCATTTTACCCCTAAACTTCCAAAAATCC
1065 CATTTTTAACCCCGAAACATCCA
194 CATTTTTAACCCCGAAACATCCA
*
1088 AAAATTACTATTTTAC
1 AAAATTACCATTTTAC
1104 TCCCGGATGT
Statistics
Matches: 208, Mismatches: 20, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
215 31 0.15
216 170 0.82
217 7 0.03
ACGTcount: A:0.35, C:0.31, G:0.02, T:0.32
Consensus pattern (216 bp):
AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTAACCCCAAAAATTACCATTTTAC
TCTCGAACTTCCAAAAATCATATTTTTACCCCAAAAATTACCATTTTACCCCCAAACTTCAAAAA
CTCCCATTTTTTACCCCCAACCTTCCAAAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCA
TTTTTAACCCCGAAACATCCA
Found at i:999 original size:50 final size:49
Alignment explanation
Indices: 872--1017 Score: 195
Period size: 50 Copynumber: 3.0 Consensus size: 49
862 GAACCTTCTA
* *
872 AAAATTACCATTTTACCCCTAAACTTCCAAAAATCCCA-TTTTTACCCC
1 AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTTACCCT
* * ** * *
920 AAAATTACCATTTTACTCTCGGACTTCCAAAAAACTCATTTTTTACCCT
1 AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTTACCCT
*
969 AAAATTTACCATTTTACCCCCAAACTTCCAAAACTCCCATTTTTTACCC
1 AAAA-TTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTTACCC
1018 CCAACCTTCC
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
48 31 0.38
49 13 0.16
50 37 0.46
ACGTcount: A:0.34, C:0.32, G:0.01, T:0.34
Consensus pattern (49 bp):
AAAATTACCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTTACCCT
Found at i:1016 original size:30 final size:30
Alignment explanation
Indices: 980--1092 Score: 113
Period size: 30 Copynumber: 3.8 Consensus size: 30
970 AAATTTACCA
*
980 TTTTACCCCCAAACTTCCAAAACTCCCATT
1 TTTTACCCCCAAACTTCCAAAAATCCCATT
* *
1010 TTTTACCCCCAACCTTCCAAAAATTACCA--
1 TTTTACCCCCAAACTTCCAAAAA-TCCCATT
** * *
1039 TTTTACCCCTGAAGTTCCAAAAATCTCATT
1 TTTTACCCCCAAACTTCCAAAAATCCCATT
* * *
1069 TTTAACCCCGAAACATCCAAAAAT
1 TTTTACCCCCAAACTTCCAAAAAT
1093 TACTATTTTA
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
28 3 0.05
29 19 0.29
30 40 0.61
31 4 0.06
ACGTcount: A:0.35, C:0.34, G:0.03, T:0.29
Consensus pattern (30 bp):
TTTTACCCCCAAACTTCCAAAAATCCCATT
Found at i:1102 original size:30 final size:30
Alignment explanation
Indices: 1025--1102 Score: 74
Period size: 30 Copynumber: 2.6 Consensus size: 30
1015 CCCCCAACCT
* **
1025 TCCAAAAATTACCATTTT-ACCCCTGAAGT
1 TCCAAAAATTACTATTTTAACCCCTGAACA
1054 TCCAAAAA-T-CTCATTTTTAACCCC-GAAACA
1 TCCAAAAATTACT-A-TTTTAACCCCTG-AACA
1084 TCCAAAAATTACTATTTTA
1 TCCAAAAATTACTATTTTA
1103 CTCCCGGATG
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
27 1 0.03
28 2 0.05
29 13 0.32
30 20 0.50
31 2 0.05
32 2 0.05
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (30 bp):
TCCAAAAATTACTATTTTAACCCCTGAACA
Found at i:1117 original size:59 final size:59
Alignment explanation
Indices: 969--1118 Score: 167
Period size: 59 Copynumber: 2.5 Consensus size: 59
959 TTTTTACCCT
* ** * * * * *
969 AAAATTTACCATTTTACCCCCAAACTTCCAAAACTCCCATTTTTTACCCCCAACCTTCC
1 AAAAATTACCATTTTACCCCGGAAGTTCCAAAAATCCCATTTTTAACCCCCAAACATCC
* * *
1028 AAAAATTACCATTTTACCCCTGAAGTTCCAAAAATCTCATTTTTAACCCCGAAACATCC
1 AAAAATTACCATTTTACCCCGGAAGTTCCAAAAATCCCATTTTTAACCCCCAAACATCC
* *
1087 AAAAATTACTATTTTACTCCCGGATG-TCCAAA
1 AAAAATTACCATTTTAC-CCCGGAAGTTCCAAA
1119 GACTCCGTTT
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
59 71 0.92
60 6 0.08
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.30
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCGGAAGTTCCAAAAATCCCATTTTTAACCCCCAAACATCC
Found at i:3299 original size:28 final size:28
Alignment explanation
Indices: 3263--3424 Score: 129
Period size: 28 Copynumber: 5.8 Consensus size: 28
3253 ATCAAGTGAA
*
3263 GGCTTGGGTAGAGCATTATTCTGAATTT
1 GGCTCGGGTAGAGCATTATTCTGAATTT
* *
3291 GGCTCGGGTAGAGCAGTATTCT-ATTTTT
1 GGCTCGGGTAGAGCATTATTCTGA-ATTT
* * * *
3319 GG-TTGAGTAGAGCGTTACTCTGAATCTT
1 GGCTCGGGTAGAGCATTATTCTGAAT-TT
* *
3347 -GCTCGAGTAGAGCATTATTCT-ACTTTT
1 GGCTCGGGTAGAGCATTATTCTGA-ATTT
* *
3374 GGCTCGGGTAGAGTGA-TACTCTGAATCTT
1 GGCTCGGGTAGAG-CATTATTCTGAAT-TT
*
3403 -GCTCCGGTAGAGCATTATTCTG
1 GGCTCGGGTAGAGCATTATTCTG
3425 CTTCTGGATC
Statistics
Matches: 104, Mismatches: 20, Indels: 20
0.72 0.14 0.14
Matches are distributed among these distances:
27 21 0.20
28 79 0.76
29 4 0.04
ACGTcount: A:0.20, C:0.16, G:0.27, T:0.36
Consensus pattern (28 bp):
GGCTCGGGTAGAGCATTATTCTGAATTT
Found at i:3341 original size:55 final size:56
Alignment explanation
Indices: 3282--3478 Score: 245
Period size: 56 Copynumber: 3.5 Consensus size: 56
3272 AGAGCATTAT
* * * *
3282 TCTGAAT-TTGGCTCGGGTAGAGCAGTATTCTATTTTTGG-TTGAGTAGAGCGTTAC
1 TCTGAATCTT-GCTCGGGTAGAGCATTATTCTACTTTTGGATCGAGTAGAGCGATAC
* * * *
3337 TCTGAATCTTGCTCGAGTAGAGCATTATTCTACTTTTGGCTCGGGTAGAGTGATAC
1 TCTGAATCTTGCTCGGGTAGAGCATTATTCTACTTTTGGATCGAGTAGAGCGATAC
* * *
3393 TCTGAATCTTGCTCCGGTAGAGCATTATTCTGCTTCTGGATCGAGTAGAGCGATAC
1 TCTGAATCTTGCTCGGGTAGAGCATTATTCTACTTTTGGATCGAGTAGAGCGATAC
* *
3449 TCTGAATCTTGCTTGGGGCAGAGCATTATT
1 TCTGAATCTTGC-TCGGGTAGAGCATTATT
3479 TTGATTATGG
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
55 33 0.27
56 75 0.61
57 14 0.11
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (56 bp):
TCTGAATCTTGCTCGGGTAGAGCATTATTCTACTTTTGGATCGAGTAGAGCGATAC
Found at i:3440 original size:28 final size:28
Alignment explanation
Indices: 3270--3443 Score: 117
Period size: 28 Copynumber: 6.2 Consensus size: 28
3260 GAAGGCTTGG
*
3270 GTAGAGCATTATTCTGAATT-TGGCTCGG
1 GTAGAGCATTATTCTG-ATTCTGGCTCGA
* * *
3298 GTAGAGCAGTATTCT-ATTTTTGG-TTGA
1 GTAGAGCATTATTCTGA-TTCTGGCTCGA
* * * *
3325 GTAGAGCGTTACTCTGAATCTTGCTCGA
1 GTAGAGCATTATTCTGATTCTGGCTCGA
* *
3353 GTAGAGCATTATTCT-ACTTTTGGCTCGG
1 GTAGAGCATTATTCTGA-TTCTGGCTCGA
* * * *
3381 GTAGAGTGA-TACTCTGAATCTTGCTCCG-
1 GTAGAG-CATTATTCTGATTCTGGCT-CGA
* *
3409 GTAGAGCATTATTCTGCTTCTGGATCGA
1 GTAGAGCATTATTCTGATTCTGGCTCGA
3437 GTAGAGC
1 GTAGAGC
3444 GATACTCTGA
Statistics
Matches: 109, Mismatches: 27, Indels: 20
0.70 0.17 0.13
Matches are distributed among these distances:
26 1 0.01
27 23 0.21
28 81 0.74
29 4 0.04
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (28 bp):
GTAGAGCATTATTCTGATTCTGGCTCGA
Found at i:3452 original size:28 final size:28
Alignment explanation
Indices: 3323--3457 Score: 98
Period size: 28 Copynumber: 4.8 Consensus size: 28
3313 ATTTTTGGTT
* *
3323 GAGTAGAGCGTTACTCTGAATCTTGCTC
1 GAGTAGAGCGATACTCTGAATCTGGCTC
* * *
3351 GAGTAGAGC-ATTATTCT-ACTTTTGGCTC
1 GAGTAGAGCGA-TACTCTGA-ATCTGGCTC
* * *
3379 GGGTAGAGTGATACTCTGAATCTTGCTCC
1 GAGTAGAGCGATACTCTGAATCTGGCT-C
* ** *
3408 G-GTAGAGC-ATTATTCTGCTTCTGGATC
1 GAGTAGAGCGA-TACTCTGAATCTGGCTC
3435 GAGTAGAGCGATACTCTGAATCT
1 GAGTAGAGCGATACTCTGAATCT
3458 TGCTTGGGGC
Statistics
Matches: 79, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
27 4 0.05
28 70 0.89
29 5 0.06
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (28 bp):
GAGTAGAGCGATACTCTGAATCTGGCTC
Found at i:3527 original size:28 final size:28
Alignment explanation
Indices: 3475--3554 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 28
3465 GGCAGAGCAT
* ** * *
3475 TATTTTGATTATGGCTTAGATAGAGGGA
1 TATTTTGATTTTGGCTCGGAAAGAGCGA
3503 TATTTTGATTTTGGCTCGGAAAGAGCGA
1 TATTTTGATTTTGGCTCGGAAAGAGCGA
* * * *
3531 TAATCTGATTTTGACTCGAAAAGA
1 TATTTTGATTTTGGCTCGGAAAGA
3555 ATGATATTCT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.30, C:0.09, G:0.25, T:0.36
Consensus pattern (28 bp):
TATTTTGATTTTGGCTCGGAAAGAGCGA
Found at i:3560 original size:28 final size:28
Alignment explanation
Indices: 3508--3565 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
3498 AGGGATATTT
* * *
3508 TGATTTTGGCTCGGAAAGAGCGATAATC
1 TGATTTTGACTCGAAAAGAACGATAATC
* *
3536 TGATTTTGACTCGAAAAGAATGATATTC
1 TGATTTTGACTCGAAAAGAACGATAATC
3564 TG
1 TG
3566 GCTTGGCTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.33
Consensus pattern (28 bp):
TGATTTTGACTCGAAAAGAACGATAATC
Found at i:6457 original size:17 final size:17
Alignment explanation
Indices: 6435--6472 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
6425 TAATTGTATT
6435 TGTATTATATCTGCATC
1 TGTATTATATCTGCATC
*
6452 TGTATTATATTTGCATC
1 TGTATTATATCTGCATC
6469 TGTA
1 TGTA
6473 ACTGTATTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.13, G:0.13, T:0.50
Consensus pattern (17 bp):
TGTATTATATCTGCATC
Found at i:6487 original size:29 final size:29
Alignment explanation
Indices: 6453--6522 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
6443 ATCTGCATCT
* *
6453 GTATTATATTTGCATCTGTAACTGTATTC
1 GTATTATATCTGCATCTGGAACTGTATTC
* * *
6482 GTATTATATCTGTATTTGGAATTGTATTC
1 GTATTATATCTGCATCTGGAACTGTATTC
*
6511 ATATTATATCTG
1 GTATTATATCTG
6523 ACATTCTGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (29 bp):
GTATTATATCTGCATCTGGAACTGTATTC
Found at i:6494 original size:23 final size:22
Alignment explanation
Indices: 6419--6495 Score: 75
Period size: 23 Copynumber: 3.4 Consensus size: 22
6409 TAAGAACTTG
*
6419 TATCTGTAATTGTATTTGTATTA
1 TATCTGTAACTGTA-TTGTATTA
* * *
6442 TATCTGCATCTGTATTATATT-
1 TATCTGTAACTGTATTGTATTA
6463 TGCATCTGTAACTGTATTCGTATTA
1 T--ATCTGTAACTGTATT-GTATTA
6488 TATCTGTA
1 TATCTGTA
6496 TTTGGAATTG
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 1 0.02
22 6 0.14
23 31 0.72
24 4 0.09
25 1 0.02
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.51
Consensus pattern (22 bp):
TATCTGTAACTGTATTGTATTA
Found at i:7141 original size:4 final size:4
Alignment explanation
Indices: 7132--7158 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
7122 TTTTCTTCCT
7132 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
7159 TTATTATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Done.