Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004995.1 Kokia drynarioides strain JFW-HI SEQ_118751, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 862
Length: 1438
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Found at i:723 original size:215 final size:215
Alignment explanation
Indices: 1--815 Score: 1071
Period size: 215 Copynumber: 3.8 Consensus size: 215
* * * * * * **
1 GAATGGATCGTTTTGAACACTTTAAGGAATCGAAGTTATAAAAGAACTCATATTATTTTGACAAG
1 GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACAAG
* * * * *
66 CTCATAAGTTTATCCAAG-ACCAAAAGAAAAAACAAGTCTCACTTATATAAGTTCTTAATTTAAA
66 CTCATAAGTTCATCCAAGAACCAAAAG-AGAAACAAGTCACACTTAAATAAGTTTTTAATTTAAA
* *
130 AACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCAAATGATGTGATTTCACAAGCATGGAA
130 AACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCAAATGTTGCGATTTCACAAGCATGGAA
*
195 TGTTCGAAAAATTACTCGAAG
195 TGTTCGAAAAATTGCTCGAAG
* * * *
216 GAATGAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTCACAAG
1 GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACAAG
* * * * * * * *
281 TTCATAAGTTCGTCCATGAAACAAAAGAGAAACAATTCTA-ACGTAAATAAGTTTTAAATTCAAA
66 CTCATAAGTTCATCCAAGAACCAAAAGAGAAACAAGTC-ACACTTAAATAAGTTTTTAATTTAAA
* * * * * *
345 GACCAAAAGTTGTTTACAAAATGACAAACCATTTGGACCAAAT-TATGCAATTTCCCAAGAAGGG
130 AACCAAAAGTTGTTTAC-AAATGACAAACTATTTGGACCAAATGT-TGCGATTTCACAAGCATGG
* *
409 AATGTTCGAAAAATGGCTTGAAG
193 AATGTTCGAAAAATTGCTCGAAG
**
432 GAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTT-ACAA
1 GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA-TTTTGACAA
* ***
496 GTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACTTAAATAAGTTTTTAATTTAAA
65 GCTCATAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACTTAAATAAGTTTTTAATTTAAA
*
561 AACCAAAAGTTGTTTACAAATGAAAAACTATTTGGACCAAATGTTGCGATTTCACAAGCATGGAA
130 AACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCAAATGTTGCGATTTCACAAGCATGGAA
* * *
626 TGCTCAAAAAATTGCTCAAAG
195 TGTTCGAAAAATTGCTCGAAG
* * * *
647 GAATGGATCATTTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGCAACATTTTGACAAG
1 GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACAAG
* * *
712 CTCGTAAGTTCACCCAAGAACCAAAAGAGAAACAAGTCTCACTTAAATAAGTTTTTTAATTTAAA
66 CTCATAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACTTAAATAAG-TTTTTAATTTAAA
777 AACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCA
130 AACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCA
816 TAAAGATTCG
Statistics
Matches: 518, Mismatches: 73, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
214 4 0.01
215 270 0.52
216 241 0.47
217 3 0.01
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (215 bp):
GAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTTGACAAG
CTCATAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACTTAAATAAGTTTTTAATTTAAAA
ACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCAAATGTTGCGATTTCACAAGCATGGAAT
GTTCGAAAAATTGCTCGAAG
Found at i:804 original size:431 final size:426
Alignment explanation
Indices: 1--1434 Score: 1701
Period size: 431 Copynumber: 3.4 Consensus size: 426
** * * * * **
1 GAATGGATCGTTTTGAACACTTTAAGGAATCGAAGTTATAAAAGAACTCATATTA-TTTTGACAA
1 GAATGGATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTT-ACAA
* * * * * * * * *
65 GCTCATAAGTTTATCCAAG-ACCAAAAGAAAAAACAAGTCTCACTTATATAAGTTCTTAATTTAA
65 GTTCAGAAGTTCATCCAAGAACCAAAAG-AGAAACAAGTCACACGTAAATAAGTTTTTAATTCAA
* *
129 AAACCAAAAGTTGTTTACAAATGACAAACTATTTGGACCAAATGATGTGATTTCACAAGCATGGA
129 AAACCAAAAGTTGTTTACAAATGAAAAACTATTTGGACCAAATGATGCGATTTCACAAGCATGGA
* *
194 ATGTTCGAAAAATTACTCGAAGGAATGAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
194 ATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * * * * *
259 GAACTCGTAAAAGTTTCACAAGTTCATAAGTTCGTCCATGAAACAAAAGAGAAACAATTCTAACG
259 GAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTAACA
324 TAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCATTTGGACCAAATT
324 TAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTAC-AAATGACAAACCATTTGGACCAAA-T
*
389 ATGCAATTTCCCAAGAAGGGAATGTTCGAAAAATGGCTTGAAG
387 ATGC-ATTTCCC-AGAA-GGAATGTTCGAAAAATGGCTCGAAG
* *
432 GAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
1 GAATGGATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
** * *
497 TTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACTTAAATAAGTTTTTAATTTAAAA
66 TTCAGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACGTAAATAAGTTTTTAATTCAAAA
*
562 ACCAAAAGTTGTTTACAAATGAAAAACTATTTGGACCAAATGTTGCGATTTCACAAGCATGGAAT
131 ACCAAAAGTTGTTTACAAATGAAAAACTATTTGGACCAAATGATGCGATTTCACAAGCATGGAAT
* * * * * *
627 GCTCAAAAAATTGCTCAAAGGAATGGATCATTTTGAATACTTTAAGGAATCAAAGTTATAAAAGA
196 GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * * * * *
692 ACTCGCAACATTTTGACAAGCTCGTAAGTTCACCCAAGAACCAAAAGAGAAACAAGTCTCACTTA
261 ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTAACATA
* * * *
757 AATAAGTTTTTTAATTTAAAAACCAAAAGTTGTTTACAAATGACAAACTATTTGGA-C-------
326 AATAAG-TTTTAAATTCAAAGACCAAAAGTTGTTTACAAATGACAAACCATTTGGACCAAATATG
**
814 CA--T---A-AA-G-A--TTCGAAAAATTACTCGAAG
390 CATTTCCCAGAAGGAATGTTCGAAAAATGGCTCGAAG
* *
841 GAATGGATTGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTCACAAG
1 GAATGGATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
* * * *
906 TTCATAAGTT-AGTCCAAGAACCAAAAGAGAAACAA-TCTA-ACGTAAATAAATTTTAAAGTCAA
66 TTCAGAAGTTCA-TCCAAGAACCAAAAGAGAAACAAGTC-ACACGTAAATAAGTTTTTAATTCAA
* * * * * * *
968 AGACCAAAAGTTTTTTAGAAAATGACAGAGC-ATTTGGACCAAATGATGCGATTTCCCGAGCATG
129 AAACCAAAAGTTGTTTA-CAAATGA-AAAACTATTTGGACCAAATGATGCGATTTCACAAGCATG
* * **
1032 GAATGTTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATAAGTTAAGGAACCAAAGTTATAA
192 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAA
* * * *
1097 AAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACCAAAAGAGAAACAATTCTGA
257 AAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTAA
* *
1162 CATAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTCCAAATGACAAAGCATTTGGACCAAAT
322 CATAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAATGACAAACCATTTGGACCAAAT
*
1227 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCGAAG
387 -ATGC-ATTTCCC-AG-AAGGAATGTTCGAAAAATGGCTCGAAG
* * * *
1271 GAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAGAAC
1 GAATGGATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
** * * * * ** *
1336 TTTGGAAGTTCGTCCAAGTACCAAAACAGAAACAATTCTGACGTAAATAAGTTTTTAATTCAAAG
66 TTCAGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACGTAAATAAGTTTTTAATTCAAAA
*
1401 ACCAAAAAGTTGTTTACGAAATGACAAACTATTT
131 ACC-AAAAGTTGTTTAC-AAATGAAAAACTATTT
1435 TGGA
Statistics
Matches: 848, Mismatches: 120, Indels: 69
0.82 0.12 0.07
Matches are distributed among these distances:
408 79 0.09
409 264 0.31
410 3 0.00
411 1 0.00
412 1 0.00
414 2 0.00
415 1 0.00
417 1 0.00
418 1 0.00
419 1 0.00
420 1 0.00
421 1 0.00
422 1 0.00
424 1 0.00
426 1 0.00
427 1 0.00
428 1 0.00
430 106 0.12
431 321 0.38
432 60 0.07
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (426 bp):
GAATGGATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAG
TTCAGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACGTAAATAAGTTTTTAATTCAAAA
ACCAAAAGTTGTTTACAAATGAAAAACTATTTGGACCAAATGATGCGATTTCACAAGCATGGAAT
GTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAAGTTCGTAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTAACATA
AATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAATGACAAACCATTTGGACCAAATATGC
ATTTCCCAGAAGGAATGTTCGAAAAATGGCTCGAAG
Found at i:1139 original size:215 final size:215
Alignment explanation
Indices: 822--1428 Score: 948
Period size: 215 Copynumber: 2.8 Consensus size: 215
812 ACCATAAAGA
** * *
822 TTCGAAAAATTACTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAA
* *** *
887 CTCGTAAAAGTTTCACAAGTTCATAAGTT-AGTCCAAGAACCAAAAGAGAAACAA-TCTAACGTA
66 CTCGTAAAAGTTTGACAAGTTTGGAAGTTCA-TCCAAGAACCAAAAGAGAAACAATTCTGACGTA
* * * *
950 AATAAATTTTAAAGTCAAAGACCAAAAGTTTTTTAGAAAATGACAGAGCATTTGGACCAAATGAT
130 AATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTAG-AAATGACAAAGCATTTGGACCAAATGAT
1015 GCGATTTCCCGAGCATGGAATG
194 GCGATTTCCCGAGCATGGAATG
*
1037 TTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATAAGTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAA
* *
1102 CTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACCAAAAGAGAAACAATTCTGACATAA
66 CTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTGACGTAA
**
1167 ATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTCCAAATGACAAAGCATTTGGACCAAATGATGC
131 ATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTAGAAATGACAAAGCATTTGGACCAAATGATGC
1232 GATTTCCCGAGCATGGAATG
196 GATTTCCCGAGCATGGAATG
1252 TTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAA
* * * * *
1317 CTCGTAAAAGTTTGAGAACTTTGGAAGTTCGTCCAAGTACCAAAACAGAAACAATTCTGACGTAA
66 CTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTGACGTAA
*
1382 ATAAGTTTTTAATTCAAAGACCAAAAAGTTGTTTACGAAATGACAAA
131 ATAAGTTTTAAATTCAAAGACC-AAAAGTTGTTTA-GAAATGACAAA
1429 CTATTTTGGA
Statistics
Matches: 359, Mismatches: 29, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
215 299 0.83
216 50 0.14
217 10 0.03
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (215 bp):
TTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAA
CTCGTAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAATTCTGACGTAA
ATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTAGAAATGACAAAGCATTTGGACCAAATGATGC
GATTTCCCGAGCATGGAATG
Found at i:1172 original size:409 final size:408
Alignment explanation
Indices: 413--1434 Score: 1118
Period size: 409 Copynumber: 2.4 Consensus size: 408
403 GAAGGGAATG
* *
413 TTCGAAAAATGGCTTGAAGGAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATGACTCGAAGGAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* ** *
478 CTCGTAAAAGTTTTACAAGTTTGGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACTTAA
66 CTCGTAAAAGTTTCACAAGTTCAGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACGTAA
* * * * * *
543 ATAAGTTTTTAATTTAAAAACCAAAAGTTGTTTACAAATGAAAAACTATTTGGACCAAATGTTGC
131 ATAAATTTTAAAGTCAAAAACCAAAAGTTGTTTAAAAATGAAAAACTATTTGGACCAAATGATGC
* ** **
608 GATTTCACAAGCATGGAATGCTCAAAAAATTGCTCAAAGGAATGGATCATTTTGAATACTTTAAG
196 GATTTCACAAGCATGGAATGCTCAAAAAATGGCTCAAAGGAATGGATCATCATGAATAAGTTAAG
* * * * *
673 GAATCAAAGTTATAAAAGAACTCGCAACATTTTGACAAGCTCGTAAGTTCACCCAAGAACCAAAA
261 GAACCAAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGCTCGGAAATTCACCCAAGAACCAAAA
* * *
738 GAGAAACAAGTCTCACTTAAATAAGTTTTTTAATTTAAAAACCAAAAGTTGTTTACAAATGACAA
326 GAGAAACAAGTCTCACATAAATAAG-TTTTAAATTCAAAAACCAAAAGTTGTTTACAAATGACAA
803 A-CTATTTGGACCATAAAGA
390 AGC-ATTTGGACCATAAAGA
* ** *
822 TTCGAAAAATTACTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATGACTCGAAGGAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAGAA
*
887 CTCGTAAAAGTTTCACAAGTTCATAAGTT-AGTCCAAGAACCAAAAGAGAAACAA-TCTA-ACGT
66 CTCGTAAAAGTTTCACAAGTTCAGAAGTTCA-TCCAAGAACCAAAAGAGAAACAAGTC-ACACGT
* * * *
949 AAATAAATTTTAAAGTCAAAGACCAAAAGTTTTTTAGAAAATGACAGAGC-ATTTGGACCAAATG
129 AAATAAATTTTAAAGTCAAAAACCAAAAGTTGTTTA-AAAATGA-AAAACTATTTGGACCAAATG
* * * * * *
1013 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATAAGT
192 ATGCGATTTCACAAGCATGGAATGCTCAAAAAATGGCTCAAAGGAATGGATCATCATGAATAAGT
* * * *
1078 TAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACC
257 TAAGGAACCAAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGCTCGGAAATTCACCCAAGAACC
* * * *
1143 AAAAGAGAAACAATTCTGACATAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTCCAAATGA
322 AAAAGAGAAACAAGTCTCACATAAATAAGTTTTAAATTCAAAAACCAAAAGTTGTTTACAAATGA
1208 CAAAGCATTTGGACCAAATGATGCGATTTCCCGAGCATGGAA
387 CAAAGCATTTGGACC-----AT---A-------A--A--G-A
* * * *
1250 TGTTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAG
1 --TTCGAAAAATGACTCGAAGGAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * ** * * * * **
1315 AACTCGTAAAAGTTTGAGAACTTTGGAAGTTCGTCCAAGTACCAAAACAGAAACAATTCTGACGT
64 AACTCGTAAAAGTTTCACAAGTTCAGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACGT
* * * * * *
1380 AAATAAGTTTTTAATTCAAAGACCAAAAAGTTGTTTACGAAATGACAAACTATTT
129 AAATAAATTTTAAAGTCAAAAACC-AAAAGTTGTTTA-AAAATGAAAAACTATTT
1435 TGGA
Statistics
Matches: 510, Mismatches: 71, Indels: 41
0.82 0.11 0.07
Matches are distributed among these distances:
408 81 0.16
409 264 0.52
410 3 0.01
413 2 0.00
416 1 0.00
423 1 0.00
425 1 0.00
427 1 0.00
428 1 0.00
430 105 0.21
431 29 0.06
432 21 0.04
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (408 bp):
TTCGAAAAATGACTCGAAGGAATGGATCATCAAGAATACTTTAAGGAACCAAAGTTATAAAAGAA
CTCGTAAAAGTTTCACAAGTTCAGAAGTTCATCCAAGAACCAAAAGAGAAACAAGTCACACGTAA
ATAAATTTTAAAGTCAAAAACCAAAAGTTGTTTAAAAATGAAAAACTATTTGGACCAAATGATGC
GATTTCACAAGCATGGAATGCTCAAAAAATGGCTCAAAGGAATGGATCATCATGAATAAGTTAAG
GAACCAAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGCTCGGAAATTCACCCAAGAACCAAAA
GAGAAACAAGTCTCACATAAATAAGTTTTAAATTCAAAAACCAAAAGTTGTTTACAAATGACAAA
GCATTTGGACCATAAAGA
Found at i:1386 original size:624 final size:626
Alignment explanation
Indices: 197--1434 Score: 1874
Period size: 624 Copynumber: 2.0 Consensus size: 626
187 GCATGGAATG
*
197 TTCGAAAAATTACTCGAAGGAATGAATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATTACTCGAAGGAATGAATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* *
262 CTCGTAAAAGTTTCACAAGTTCATAAGTTCGTCCATGAAACAAAAGAGAAACAATTCTAACGTAA
66 CTCGTAAAAGTTTCACAAGTTCATAAGTTAGTCCAAGAAACAAAAGAGAAACAATTCTAACGTAA
* * *
327 ATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCATTTGGACCAAATTATG
131 ATAAATTTTAAAGTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCATTTGGACCAAATGATG
* **
392 CAATTTCCCAAGAAGGGAATGTTCGAAAAATGGCTTGAAGGAATGGATCATCAAGAATACTTTAA
196 CAATTTCCCAAGAAGGGAATGTTCGAAAAATGGCTCGAAGGAATGGATCATCAAGAATAAGTTAA
* *
457 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTTACAAGTTTGGAAGTTCATCCAAGAACCAAA
261 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACCAAA
* * *
522 AGAGAAACAAGTCACACTTAAATAAGTTTTTAATTTAAAAACCAAAAGTTGTTTACAAATGAAAA
326 AGAGAAACAAGTCACACATAAATAAGTTTTAAATTCAAAAACCAAAAGTTGTTTACAAATGAAAA
* *
587 ACTATTTGGACCAAATGTTGCGATTTCACAAGCATGGAATGCTCAAAAAATTGCTCAAAGGAATG
391 ACTATTTGGACCAAATGATGCGATTTCACAAGCATGGAATGCTCAAAAAATGGCTCAAAGGAATG
** * * * * *
652 GATCATTTTGAATACTTTAAGGAATCAAAGTTATAAAAGAACTCGCAACATTTTGACAAGCTCGT
456 GATCATCATGAATACGTTAAGGAACCAAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGCTCGG
* * *
717 AAGTTCACCCAAGAACCAAAAGAGAAACAAGTCTCACTTAAATAAGTTTTTTAATTTAAAAACC-
521 AAGTTCACCCAAGAACCAAAACAGAAACAAGTCTCACGTAAATAAG-TTTTTAATTCAAAAACCA
781 AAAAGTTGTTTAC-AAATGACAAACTATTTGGACCATAAAGA
585 AAAAGTTGTTTACGAAATGACAAACTATTTGGACCATAAAGA
* *
822 TTCGAAAAATTACTCGAAGGAATGGATTGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
1 TTCGAAAAATTACTCGAAGGAATGAATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
*
887 CTCGTAAAAGTTTCACAAGTTCATAAGTTAGTCCAAGAACCAAAAGAGAAACAA-TCTAACGTAA
66 CTCGTAAAAGTTTCACAAGTTCATAAGTTAGTCCAAGAAACAAAAGAGAAACAATTCTAACGTAA
* * * *
951 ATAAATTTTAAAGTCAAAGACCAAAAGTTTTTTAGAAAATGACAGAGCATTTGGACCAAATGATG
131 ATAAATTTTAAAGTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCATTTGGACCAAATGATG
* * * * * *
1016 CGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCGAAGGAATGGATCGTCATGAATAAGTTAA
196 CAATTTCCCAAGAAGGGAATGTTCGAAAAATGGCTCGAAGGAATGGATCATCAAGAATAAGTTAA
1081 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACCAAA
261 GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACCAAA
* ** * *
1146 AGAGAAACAATTCTGACATAAATAAGTTTTAAATTCAAAGACCAAAAGTTGTTTCCAAATGACAA
326 AGAGAAACAAGTCACACATAAATAAGTTTTAAATTCAAAAACCAAAAGTTGTTTACAAATGA-AA
* * * * * *
1211 AGC-ATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGCTCGAAGGAAT
390 AACTATTTGGACCAAATGATGCGATTTCACAAGCATGGAATGCTCAAAAAATGGCTCAAAGGAAT
* * * *
1275 GGATCGTCATGAATACGTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGAGAA-CTTT
455 GGATCATCATGAATACGTTAAGGAACCAAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGC-TC
** * * * *
1339 GGAAGTTCGTCCAAGTACCAAAACAGAAACAATTCTGACGTAAATAAGTTTTTAATTCAAAGACC
519 GGAAGTTCACCCAAGAACCAAAACAGAAACAAGTCTCACGTAAATAAGTTTTTAATTCAAAAACC
1404 AAAAAGTTGTTTACGAAATGACAAACTATTT
584 AAAAAGTTGTTTACGAAATGACAAACTATTT
1435 TGGA
Statistics
Matches: 549, Mismatches: 60, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
623 16 0.03
624 400 0.73
625 133 0.24
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.26
Consensus pattern (626 bp):
TTCGAAAAATTACTCGAAGGAATGAATCGTCATGAATACTTTAAGGAACCAAAGTTATAAAAGAA
CTCGTAAAAGTTTCACAAGTTCATAAGTTAGTCCAAGAAACAAAAGAGAAACAATTCTAACGTAA
ATAAATTTTAAAGTCAAAGACCAAAAGTTGTTTACAAAATGACAAACCATTTGGACCAAATGATG
CAATTTCCCAAGAAGGGAATGTTCGAAAAATGGCTCGAAGGAATGGATCATCAAGAATAAGTTAA
GGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTTGGAAATTCATCCAAGAACCAAA
AGAGAAACAAGTCACACATAAATAAGTTTTAAATTCAAAAACCAAAAGTTGTTTACAAATGAAAA
ACTATTTGGACCAAATGATGCGATTTCACAAGCATGGAATGCTCAAAAAATGGCTCAAAGGAATG
GATCATCATGAATACGTTAAGGAACCAAAGTTATAAAAGAACTCGCAAAAGTTTGACAAGCTCGG
AAGTTCACCCAAGAACCAAAACAGAAACAAGTCTCACGTAAATAAGTTTTTAATTCAAAAACCAA
AAAGTTGTTTACGAAATGACAAACTATTTGGACCATAAAGA
Done.