genome.fa.s4999.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004999.1 Kokia drynarioides strain JFW-HI SEQ_118758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56623

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6460--6498	17	2.2	18	86	4	53	30	0	17	51	1.46
10913--10963	26	2.0	26	92	0	84	31	17	17	33	1.94
11763--11793	16	1.9	16	93	0	53	22	16	0	61	1.34
17801--17831	16	1.9	16	93	0	53	61	0	16	22	1.34
19624--19872	30	8.4	29	75	10	175	42	4	19	34	1.70
19957--20000	23	1.9	23	85	0	61	63	2	13	20	1.40
21503--21550	25	1.9	25	86	0	69	29	22	27	20	1.99
21524--21861	40	8.7	39	70	10	219	25	18	24	31	1.97
21524--22160	78	7.9	78	78	10	470	25	17	24	32	1.97
21524--21878	38	9.1	37	73	10	237	25	18	23	32	1.97
21870--22287	44	9.8	44	78	10	384	26	18	22	33	1.97
21924--21989	34	1.9	34	96	0	123	27	18	25	28	1.98
22700--22751	24	2.2	24	92	0	86	30	19	23	26	1.98
23442--23494	20	2.8	18	79	20	63	0	20	0	79	0.74
24458--24491	7	4.9	7	96	0	59	8	2	0	88	0.62
24353--24492	75	1.9	75	83	7	187	10	15	9	65	1.47
30878--31110	30	7.8	30	78	6	213	41	4	19	33	1.73
30898--31110	61	3.5	60	76	12	213	41	4	19	34	1.72
30913--31110	91	2.2	90	80	8	251	43	5	18	32	1.72
32694--32847	82	1.9	82	87	2	229	44	4	4	46	1.44
33292--33322	13	2.5	12	90	10	53	25	0	25	48	1.52
33424--33449	7	3.7	7	100	0	52	42	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48598--48693	21	4.6	20	68	12	59	27	5	34	33	1.79
52027--52055	14	2.1	14	100	0	58	31	13	34	20	1.92
55719--55751	16	2.2	15	89	10	50	45	0	18	36	1.49

Tables:   1

The End!