Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005008.1 Kokia drynarioides strain JFW-HI SEQ_118767, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1795
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38


Found at i:1612 original size:15 final size:15

Alignment explanation


    Indices: 1592--1623  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1582 TGTAAGTTCC

                           
       1592 GTTATCTCTTCAACG
          1 GTTATCTCTTCAACG

                           
       1607 GTTATCTCTTCAACG
          1 GTTATCTCTTCAACG

              
       1622 GT
          1 GT

       1624 AATATTACGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41


Consensus pattern (15 bp):   
GTTATCTCTTCAACG

Found at i:1712 original size:14 final size:14

Alignment explanation


    Indices: 1693--1723  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1683 AGAATAAATC

                          
       1693 TTTAATTAAATAAA
          1 TTTAATTAAATAAA

                     *    
       1707 TTTAATTAATTAAA
          1 TTTAATTAAATAAA

               
       1721 TTT
          1 TTT

       1724 TTTAAACTTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (14 bp):   
TTTAATTAAATAAA
Done.