Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005015.1 Kokia drynarioides strain JFW-HI SEQ_118776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36


Found at i:482 original size:23 final size:24

Alignment explanation


    Indices: 447--491  Score: 56
    Period size: 23  Copynumber: 1.9  Consensus size: 24

        437 ATGGGTCAAA

                                    
        447 TTGGGCCTCAA-TTGTAATTTTAT
          1 TTGGGCCTCAATTTGTAATTTTAT

                  * *        *    
        470 TTGGGCTTGAATTTGTATTTTT
          1 TTGGGCCTCAATTTGTAATTTT

        492 GGACTTTTAA


Statistics
Matches: 18,  Mismatches: 3, Indels: 1
        0.82            0.14        0.05

Matches are distributed among these distances:
  23    9  0.50
  24    9  0.50

ACGTcount: A:0.18, C:0.09, G:0.20, T:0.53


Consensus pattern (24 bp):   
TTGGGCCTCAATTTGTAATTTTAT
Done.