Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005018.1 Kokia drynarioides strain JFW-HI SEQ_118779, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3733
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25


Found at i:2813 original size:30 final size:30

Alignment explanation


    Indices: 2777--2836  Score: 111
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2767 GGCAGAGAAA

                    *                     
       2777 ACAAAATTTGAAGTTTCCAAACAAATAGAG
          1 ACAAAATTAGAAGTTTCCAAACAAATAGAG

                                          
       2807 ACAAAATTAGAAGTTTCCAAACAAATAGAG
          1 ACAAAATTAGAAGTTTCCAAACAAATAGAG

       2837 GAGCAGTACA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.52, C:0.13, G:0.13, T:0.22


Consensus pattern (30 bp):   
ACAAAATTAGAAGTTTCCAAACAAATAGAG
Done.