Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000502.1 Kokia drynarioides strain JFW-HI SEQ_111379, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39


Found at i:715 original size:72 final size:72

Alignment explanation


    Indices: 598--746  Score: 289
    Period size: 72  Copynumber: 2.1  Consensus size: 72

        588 TGATGTTAGC

                                                                             
        598 TTTAGGTATGGGGTCTTATCGAGCCGCTCTATTTCATTTGATTACTCATGCTTATTCGAAAGCAT
          1 TTTAGGTATGGGGTCTTATCGAGCCGCTCTATTTCATTTGATTACTCATGCTTATTCGAAAGCAT

                   
        663 TATTGTT
         66 TATTGTT

                                                                             
        670 TTTAGGTATGGGGTCTTATCGAGCCGCTCTATTTCATTTGATTACTCATGCTTATTCGAAAGCAT
          1 TTTAGGTATGGGGTCTTATCGAGCCGCTCTATTTCATTTGATTACTCATGCTTATTCGAAAGCAT

             *     
        735 TGTTGTT
         66 TATTGTT

                 
        742 TTTAG
          1 TTTAG

        747 CATCCGGATC


Statistics
Matches: 76,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  72   76  1.00

ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44


Consensus pattern (72 bp):   
TTTAGGTATGGGGTCTTATCGAGCCGCTCTATTTCATTTGATTACTCATGCTTATTCGAAAGCAT
TATTGTT
Done.