Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005029.1 Kokia drynarioides strain JFW-HI SEQ_118792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9456
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Found at i:7164 original size:140 final size:140
Alignment explanation
Indices: 7003--7282 Score: 542
Period size: 140 Copynumber: 2.0 Consensus size: 140
6993 GTTAGGACGC
7003 AATATTTCTGAATTTTTGAAAATAAAAGACATTTGCTAACTAAATATGATATTTTGATTTTAAAG
1 AATATTTCTGAATTTTTGAAAATAAAAGACATTTGCTAACTAAATATGATATTTTGATTTTAAAG
* *
7068 AGGATATTCGAGTATATAAATTCAACGAAAAACCATACTTAATACGTTATGACATAATTTTCCGA
66 AGGATATTCGAGTATATAAATTCAACGAAAAACCATACCTAATACGTTAGGACATAATTTTCCGA
7133 ATCCCTTAAA
131 ATCCCTTAAA
7143 AATATTTCTGAATTTTTGAAAATAAAAGACATTTGCTAACTAAATATGATATTTTGATTTTAAAG
1 AATATTTCTGAATTTTTGAAAATAAAAGACATTTGCTAACTAAATATGATATTTTGATTTTAAAG
7208 AGGATATTCGAGTATATAAATTCAACGAAAAACCATACCTAATACGTTAGGACATAATTTTCCGA
66 AGGATATTCGAGTATATAAATTCAACGAAAAACCATACCTAATACGTTAGGACATAATTTTCCGA
7273 ATCCCTTAAA
131 ATCCCTTAAA
7283 CAAGAGAACA
Statistics
Matches: 138, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
140 138 1.00
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (140 bp):
AATATTTCTGAATTTTTGAAAATAAAAGACATTTGCTAACTAAATATGATATTTTGATTTTAAAG
AGGATATTCGAGTATATAAATTCAACGAAAAACCATACCTAATACGTTAGGACATAATTTTCCGA
ATCCCTTAAA
Done.