Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005033.1 Kokia drynarioides strain JFW-HI SEQ_118797, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3495
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31


Found at i:1923 original size:20 final size:21

Alignment explanation


    Indices: 1882--1936  Score: 60
    Period size: 20  Copynumber: 2.7  Consensus size: 21

       1872 TAATTTTTTT

                        *         
       1882 TAAAAATAAT-TCACAACTAAA
          1 TAAAAATAATATGACAAC-AAA

                                 
       1903 TAAAAATAATATGACAA-AAA
          1 TAAAAATAATATGACAACAAA

               *     *    
       1923 TAATAATAACATGA
          1 TAAAAATAATATGA

       1937 ACATTGATAT


Statistics
Matches: 30,  Mismatches: 3, Indels: 3
        0.83            0.08        0.08

Matches are distributed among these distances:
  20   15  0.50
  21   10  0.33
  22    5  0.17

ACGTcount: A:0.64, C:0.09, G:0.04, T:0.24


Consensus pattern (21 bp):   
TAAAAATAATATGACAACAAA
Done.