Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005034.1 Kokia drynarioides strain JFW-HI SEQ_118798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 719

Length: 1199
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45


Found at i:98 original size:32 final size:31

Alignment explanation


    Indices: 54--124  Score: 92
    Period size: 32  Copynumber: 2.3  Consensus size: 31

         44 CATTTATGGT

                          *                  
         54 ATTTTTTAATTATTTA-ATGAT-ATTTTAATAA
          1 ATTTTTTAATTATTGACAT-ATAATTTTAAT-A

                                            
         85 ATTTTTTATATTATTGACATATAATTTTAATA
          1 ATTTTTTA-ATTATTGACATATAATTTTAATA

                    
        117 ATTTTTTA
          1 ATTTTTTA

        125 CTTTGAACTC


Statistics
Matches: 36,  Mismatches: 1, Indels: 5
        0.86            0.02        0.12

Matches are distributed among these distances:
  31    8  0.22
  32   18  0.50
  33   10  0.28

ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59


Consensus pattern (31 bp):   
ATTTTTTAATTATTGACATATAATTTTAATA

Found at i:615 original size:20 final size:21

Alignment explanation


    Indices: 590--636  Score: 60
    Period size: 24  Copynumber: 2.1  Consensus size: 21

        580 TATCTTAGTG

                                 
        590 TTATTT-AAGTATAAATATTT
          1 TTATTTAAAGTATAAATATTT

                                    
        610 TTATTTAAAAAAGTATAAATATTT
          1 TTATTT---AAAGTATAAATATTT

               
        634 TTA
          1 TTA

        637 ATTTGTTGAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  20    6  0.26
  24   17  0.74

ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51


Consensus pattern (21 bp):   
TTATTTAAAGTATAAATATTT
Done.