Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005041.1 Kokia drynarioides strain JFW-HI SEQ_118815, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 927

Length: 1546
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.37


Found at i:66 original size:13 final size:13

Alignment explanation


    Indices: 42--74  Score: 50
    Period size: 13  Copynumber: 2.5  Consensus size: 13

         32 TATTTTAATT

                          
         42 TGTTTCTTTTTTAA
          1 TGTTT-TTTTTTAA

                         
         56 TGTTTTTTTTTAA
          1 TGTTTTTTTTTAA

                   
         69 T-TTTTT
          1 TGTTTTT

         75 AAGTGTATAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  12    5  0.26
  13    9  0.47
  14    5  0.26

ACGTcount: A:0.12, C:0.03, G:0.06, T:0.79


Consensus pattern (13 bp):   
TGTTTTTTTTTAA
Done.