Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005045.1 Kokia drynarioides strain JFW-HI SEQ_118825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1978
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39


Found at i:1642 original size:29 final size:28

Alignment explanation


    Indices: 1587--1642  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       1577 ATTATTTATA

                         *        *     
       1587 AAAATGATCTAAATTAAACATATATATC
          1 AAAATGATCTAAAATAAACATAAATATC

                    *                   
       1615 AAAATGATTTAAAATAAACAGTAAATAT
          1 AAAATGATCTAAAATAAACA-TAAATAT

       1643 TTTAAATGAT


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  28   18  0.75
  29    6  0.25

ACGTcount: A:0.57, C:0.07, G:0.05, T:0.30


Consensus pattern (28 bp):   
AAAATGATCTAAAATAAACATAAATATC
Done.