Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005046.1 Kokia drynarioides strain JFW-HI SEQ_118826, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4775
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:1471 original size:6 final size:6

Alignment explanation


    Indices: 1455--1489  Score: 61
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       1445 GCTTGGCCTT

                                                    
       1455 ATCCAAA ATCCAA ATCCAA ATCCAA ATCCAA ATCC
          1 ATCC-AA ATCCAA ATCCAA ATCCAA ATCCAA ATCC

       1490 GTACAATACA


Statistics
Matches: 28,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   6   24  0.86
   7    4  0.14

ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17


Consensus pattern (6 bp):   
ATCCAA

Found at i:2052 original size:48 final size:48

Alignment explanation


    Indices: 1996--2091  Score: 192
    Period size: 48  Copynumber: 2.0  Consensus size: 48

       1986 TAGTTGATGA

                                                            
       1996 AATAAAATGAATTTGAAACTTGATTCATTTATTTGTCCTTGAAACCTT
          1 AATAAAATGAATTTGAAACTTGATTCATTTATTTGTCCTTGAAACCTT

                                                            
       2044 AATAAAATGAATTTGAAACTTGATTCATTTATTTGTCCTTGAAACCTT
          1 AATAAAATGAATTTGAAACTTGATTCATTTATTTGTCCTTGAAACCTT

       2092 TATCGAACCA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48   48  1.00

ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42


Consensus pattern (48 bp):   
AATAAAATGAATTTGAAACTTGATTCATTTATTTGTCCTTGAAACCTT

Found at i:2433 original size:7 final size:7

Alignment explanation


    Indices: 2424--2454  Score: 53
    Period size: 7  Copynumber: 4.4  Consensus size: 7

       2414 ATAAGCTGTT

                  *
       2424 CATGGTT
          1 CATGGTC

                   
       2431 CATGGTC
          1 CATGGTC

                   
       2438 CATGGTC
          1 CATGGTC

                   
       2445 CATGGTC
          1 CATGGTC

               
       2452 CAT
          1 CAT

       2455 TTTGTTTGGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32


Consensus pattern (7 bp):   
CATGGTC

Done.