Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005048.1 Kokia drynarioides strain JFW-HI SEQ_118831, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 980

Length: 1634
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41


Found at i:754 original size:216 final size:215

Alignment explanation


    Indices: 334--1634  Score: 1604
    Period size: 216  Copynumber: 6.0  Consensus size: 215

        324 GGTCTAAATA

                                 *        *   *         *    *    *    *     
        334 GTTTCTCTCTTTGTTCTTGGATGAACTTCCAAACATGTCAAACTGTTACGAGTTATTTTTTAACT
          1 GTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACT

             *  *        *       * *             *              *       *  * 
        399 TCAGTTCCTTAAACTATTCAACAAGATCCATT-TTTAGAGCAATTTTTCGAACATTCCATCCTTG
         66 TTAGATCCTTAAAGTATTCAAGACGATCCATTCTTT-CAGCAATTTTTCGAATATTCCATGCTCG

                     *   *            *            *     *            *      
        463 GGAAATCGCGTCACTTGGTCTAAATATTTTGTCATTTTGTAAACATGTTTTGGTCTTTCAATTAA
        130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAA

                                 
        528 AAACTTATTTACGTGAGAATT
        195 AAACTTATTTACGTGAGAATT

                                           *         *                       
        549 GTTTCTCTCTTTGTTCTTGGACGAACTTCCGCACTTGTCAACCTTTTACTAGTTCTTTTATAACT
          1 GTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACT

              *                                        *         *       *   
        614 TTGGATCCTTAAAGTATTCAAGACGATCCATTCATTTCAGCAAATTTTCGAATTTTCCATGGTCG
         66 TTAGATCCTTAAAGTATTCAAGACGATCCATTC-TTTCAGCAATTTTTCGAATATTCCATGCTCG

             *    *                               *                *         
        679 GCAAATTGCATCATTTGGTCTAAATAGTTTGTCATTTTCCAAACAAGTTTTGGTCGTTGAATTAA
        130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAA

               *       *         
        744 AAATTTATTTAAGTGAGAATT
        195 AAACTTATTTACGTGAGAATT

                 *                      *    *                        *      
        765 GTTTCGCTCTTTGTTCTTGGACGAACTTTCGAAGTTGTCAAACTTTTACTAGTTCTTTCATAACT
          1 GTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACT

                                                 *                  *      * 
        830 TTAGATCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAATATTTCATGCTTG
         66 TTAGATCCTTAAAGTATTCAAGACGATCCATT-CTTTCAGCAATTTTTCGAATATTCCATGCTCG

                 *        *    *                  *        *       *         
        895 GGAAAACGCATCATCTGGTGTAAATAGTTTTGTCATTTAGCAAACAACTTTTGGTATTTGAATTA
        130 GGAAATCGCATCATTTGGTCTAAATAG-TTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTA

                *                 
        960 AAAAGTTATTTACGTGAGAATT
        194 AAAACTTATTTACGTGAGAATT

                  *             *        *                                   
        982 GTTTCTTTCTTTG-TCTTTGTACGAACTTTCGAACTTGTCAAACTTTTACTAGTTCTTTTATAAC
          1 GTTTCTCTCTTTGTTC-TTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAAC

               *   *         *             *   *               *      *      
       1046 TTTGGATACTT-AAGTTGTTCAAGACGATCCGTTCCTTCGAGCAATTTTTCAAATATTTCATGCT
         65 TTTAGATCCTTAAAG-TATTCAAGACGATCCATTCTTTC-AGCAATTTTTCGAATATTCCATGCT

             * *     *          *      *                                     
       1110 CTGCAAATCACATCATTTGGCCTAAATTGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATT
        128 CGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATT

               *                   
       1175 AAACACTTA-TTACGTGAGAATT
        193 AAAAACTTATTTACGTGAGAATT

                                        *       *    *             *    *    
       1197 GTTTCTCTCTTTGTTCTTGGACGAACTTTCGAACTTATCGAGA-TTTTACTAGTTATTTTTTAAC
          1 GTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTC-AAACTTTTACTAGTTCTTTTATAAC

                 *   *            * *        *    *              *       *  *
       1261 TTTAGTTCCCTAAAGTATTCAACAAGATCCATTTTTTAGAGCAATTTTTCGAACATTCCATCCTT
         65 TTTAGATCCTTAAAGTATTCAAGACGATCCATTCTTT-CAGCAATTTTTCGAATATTCCATGCTC

                      *   *            *            *                  *     
       1326 GGGAAATCGCGTCACTTGGTCTAAATATTTTGTCATTTTGTAAACAAGTTTTGGTCTTTCAATTA
        129 GGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTA

                                  
       1391 AAAACTTATTTACGTGAGAATT
        194 AAAACTTATTTACGTGAGAATT

                        *                            *                       
       1413 GTTTCTCTCTTTATTCTTGGACGAACTTCCGAACTTGTCAACCTTTTACTAGTTCTTTTATAACT
          1 GTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACT

              *                     *        *              *                
       1478 TTGGATCCTTAAAGTATTCAAGACAATCCATTCCTTCGAGCAATTTTTTGAATATTCCATGCTCG
         66 TTAGATCCTTAAAGTATTCAAGACGATCCATTCTTTC-AGCAATTTTTCGAATATTCCATGCTCG

            *        *                         * *        *  *          *    
       1543 AGAAATCGCGTCATTTGGTCTAAATAGTTTGTCATCTAGCAAACAACTTCTGGTCTTTGAGTTAA
        130 GGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAA

                       *         
       1608 AAACTTATTTATGTGAGAATT
        195 AAACTTATTTACGTGAGAATT

                  
       1629 GTTTCT
          1 GTTTCT


Statistics
Matches: 923,  Mismatches: 149, Indels: 27
        0.84            0.14        0.02

Matches are distributed among these distances:
 215  254  0.28
 216  488  0.53
 217  181  0.20

ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41


Consensus pattern (215 bp):   
GTTTCTCTCTTTGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACT
TTAGATCCTTAAAGTATTCAAGACGATCCATTCTTTCAGCAATTTTTCGAATATTCCATGCTCGG
GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGCAAACAAGTTTTGGTCTTTGAATTAAA
AACTTATTTACGTGAGAATT
Done.