Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005067.1 Kokia drynarioides strain JFW-HI SEQ_118868, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3207
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Found at i:439 original size:215 final size:215
Alignment explanation
Indices: 1--3207 Score: 3757
Period size: 215 Copynumber: 14.9 Consensus size: 215
* * *
1 GAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * * *
66 TTCGGAAGTTCGACTAATAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTAATTTAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * ** *
131 ACCAAAAGTTGTTTACAAAATGACAAACTGTTTAGGCTAAAGGGTGT-GATTTTTCGATCATGGA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGATTTCCCGAGCATGGA
195 ATGTTCAAAAAATTGCTCAAAG
195 ATGTTC-AAAAATTGCTCAAAG
*
217 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAGGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
282 TTCGAAAGTTCGGCCAAGAACCAAGAGAGTAACTATTCTCACAT-AATAAGTTTTTAATTCAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
346 ACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
411 TGTTCAAAAAGTTGCTCAAAG
196 TGTTCAAAAA-TTGCTCAAAG
* * ** * *
432 GAATGGATCGTCCTGAATA-CTTAGAATAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAA
1 GAATGGATCGTCTTGAATATTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * *
496 GTT-AAGAAGTTAGGACAA-AGACCAAGAGGGAAACAATTCTCACATAAAAAAGTTTTTAATTCA
65 GTTCGA-AAGTTCGGCCAAGA-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * *
559 AAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCAGAGCATG
128 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATG
* *
624 AAAT-TTCAGAAAATTGTTCAAAG
193 GAATGTTCA-AAAATTGCTCAAAG
* * * *
647 GAATGGATCGTCTTGAATATTTTAAAGAATCGAAGTTATAAAAGAACTCGTAAAAG-TTGTCAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
711 TTCGAAAGTTCGACCAATAACTAAGCGAGAAACAGTACTCACGTAAATAAGTTTTTAACTT-AAA
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA-TTCAAA
* * * * **
775 GACCAAAAGTTATTTACAAAATGGCAAACTATTTAGGCCAAATG-TTGCAATTTTTC-A--AT--
130 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATT-CGATTTCCCGAGCATGG
*
834 AATGTTCAACAAATTGCTCGAAG
194 AATGTTCAA-AAATTGCTCAAAG
*
857 GAATGGATCGTCTTGAATATTTTAAGGAACCAATGTTATAAAAGAACTCGTAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
922 TTCGAAAGTTCGACCAAGAACCAAGATAGAAACAATTCTCAC-TTATTAAGTTTTTAATTCAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * *
986 ACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAACGATGCAATTTCCGGAGCATGAAA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
* *
1051 AGTTCAAAAAATTGCTCAAAT
196 TGTTC-AAAAATTGCTCAAAG
* * * * * *
1072 GAATGGACCGTGTTGAATA-CTTAGAAGAATCAAAGTTATAAAAGAATTCGT--AAGTTTGACAA
1 GAATGGATCGTCTTGAATATTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * *
1134 GTT-AAGAAGTTAGGACAA-AGACCATGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCA
65 GTTCGA-AAGTTCGGCCAAGA-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* *
1197 AAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGA-T-GATTTCCCGAGTATG
128 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATG
* *
1260 GAATGTTCGAAAAAATTGTTCGAAG
193 GAATGTTC--AAAAATTGCTCAAAG
* * *
1285 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCATA
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA-A
* * * * * * * * *
1350 TTTAG-ACGTTCGACCAATAACCAAGAGGGAAACAATACTCAGGTAAATAAGTTTTTAATTTAAA
65 GTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * ** *
1414 GACCAAAAGTCT-TTTACAAATTGACAAACTATTTTGGCCAAATGA-TCTGATTTTTCGATCATG
130 GACCAAAAGT-TGTTTACAAAATGACAAACTATTTAGACCAAATGATTC-GATTTCCCGAGCATG
1477 GAATGTTCAAAAAATTGCTCAAAG
193 GAATGTTC-AAAAATTGCTCAAAG
* * * *
1501 GAATGGATCATCTTGTATATTTTAAGGAGCCAAAGATATAAAAG-ACTCGTAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
1565 TTTGAAAGTTCGGCCAAGAACCAAGAGAGAAACGATTCTCAC-TTAATAAGGTTTTAATTCAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * *
1629 ACCACAAGTTGTTTACAAAATGACTAACTATTTAGACCAAATGATGCGATTTCTCGAG-AGTGGA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCA-TGGA
* * *
1693 ATGTTCGAAAAAATGCTAAAAT
195 ATGTTC-AAAAATTGCTCAAAG
* * * * * *
1715 CAATGGATCGTCTTGAGTA-CTTAGAAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGAAAA
1 GAATGGATCGTCTTGAATATTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * ** * *
1779 GTT-AAGAAGTTAGTCCAAGGGCCAAGAGAGAAACAATGCTCACGTAAAAAAGTTTTTAATTCAA
65 GTTCGA-AAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
**
1843 AGACCAAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGAGATTTCCCGAGCATG
129 AGACCAAAA-GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATG
** * *
1908 GAATGTT-TGAAATTGTTCGAAG
193 GAATGTTCAAAAATTGCTCAAAG
* *
1930 GAATGGATCGTCTTGAATATTTTAAAGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * *
1995 TTTGAAAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * ** * *
2060 ACCAAAAGTTGTTTACAAAATGACAAACTATTTA-AGGCTAGTGATGT-GATTTTTCGATCATGC
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA-CCAAATGAT-TCGATTTCCCGAGCATGG
*
2123 AATGTTCAAATAATTGCTCGAA-
194 AATGTTCAAA-AATTGCTCAAAG
* *
2145 GAATGGATCGTTTTGAATATTTTAAGGAACCAAAGTTATATAAGAACTCGTAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * *
2210 ATCGAAAGTTCGGCCAAGAACCAAGATAGAAACAATTCTC-CCTTATTAAGTTTTTAATTCAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * ** *
2274 ACCACAAGTTGTTTACAAAATGACAAACTATTTAGATCAAATGAAGCGATTTCTCGAGCATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
* *
2339 AGTTCAGAAAATTGCTCAAAT
196 TGTTCA-AAAATTGCTCAAAG
* * * * *
2360 GAATGGA-CTGTGTTGATTA-TTTAGAAGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACA
1 GAATGGATC-GTCTTGAATATTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * * *
2423 AGTTACG-AAGTTAGGACAA-AGACCATGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTC
64 AGTT-CGAAAGTTCGGCCAAGA-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* *
2486 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAAACCAAATGATGCGATTTCCCGAGCAT
127 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCAT
* * *
2551 TGAAAGTTCAGAAAATTGCTCAAAT
192 GGAATGTTCA-AAAATTGCTCAAAG
* * * * * *
2576 GAATGGATTGTCTTGAATA-CTTAGAAGAATCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAA
1 GAATGGATCGTCTTGAATATTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * *
2640 GTT-AAGAAGTTAGGCCAA-AGACCATGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTAA
65 GTTCGA-AAGTTCGGCCAAGA-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * *
2703 AAGTCCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGCAATTTCCCGAGCATG
128 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATG
* * *
2768 GAATGTTCGGAAAATTGTTCGAAG
193 GAATGTTC-AAAAATTGCTCAAAG
* * *
2792 GAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * * *
2857 TTCGGAAGTTCGACCAATAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTAATTTAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * ** *
2922 ACCAAAAGTTGTTTACAAAATGACAAACTGTTTAGGCTAAAGGGTGT-GATTTTTCGATCATGGA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT-TCGATTTCCCGAGCATGGA
2986 ATGTTCAAAAAATTGCTCAAAG
195 ATGTTC-AAAAATTGCTCAAAG
*
3008 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAGGTTTGACAAG
1 GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
3073 TTCGAAAGTTCGGCCAAGAACCAAGAGAGTAACTATTCTCACAT-AATAAGTTTTTAATTCAAAG
66 TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
*
3137 ACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
3202 TGTTCA
196 TGTTCA
Statistics
Matches: 2564, Mismatches: 356, Indels: 144
0.84 0.12 0.05
Matches are distributed among these distances:
209 6 0.00
210 128 0.05
211 47 0.02
212 20 0.01
213 106 0.04
214 447 0.17
215 877 0.34
216 852 0.33
217 80 0.03
218 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (215 bp):
GAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
TTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATTCGATTTCCCGAGCATGGAA
TGTTCAAAAATTGCTCAAAG
Found at i:2012 original size:645 final size:645
Alignment explanation
Indices: 1--3207 Score: 4408
Period size: 645 Copynumber: 5.0 Consensus size: 645
* *
1 GAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * *
66 TTCGGAAGTTCGACTAATAACCAAGAGAGAAACAATACTCATGTAAATAAGTTTTTAATTTAAAG
66 TTTGAAAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAAAG
* * * * *
131 ACCAAAAGTTGTTTACAAAATGACAAACTGTTTAGGCTAAAGGGTGTGATTTTTCGATCATGGAA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATCTGATTTTTCGATCATGGAA
*
196 TGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAG
196 TGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAG
* * * *
261 AACTCGTAAAGGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGTAACTATTCTCACAT
261 AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACTT
* *
326 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTTTTTAGACCAAATGAT
326 AATAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
* * * * *
391 TCGATTTCCCGAGCATGGAATGTTCAAAAAGTTGCTCAAAGGAATGGATCGTCCTGAATACTTAG
391 GCGATTTCTCGAG-ATGGAATGTTCAAAAA-ATGCTCAAATGAATGGATCGTCTTGAATACTTAG
* *
456 AATAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGACAAAGACCAA
454 AAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGACAAAGACCAA
* * * *
521 GAGGGAAACAATTCTCACATAAAAAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGAC
519 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
* * *
586 AAACTATTTAGACCAAATGATGCGATTTTCAGAGCATGAAAT-TTCAGAAAATTGTTCAAAG
584 AAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGTTCAAAG
* * *
647 GAATGGATCGTCTTGAATATTTTAAAGAATCGAAGTTATAAAAGAACTCGTAAAAG-TTGTCAAG
1 GAATGGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * * * *
711 TTCGAAAGTTCGACCAATAACTAAGCGAGAAACAGTACTCACGTAAATAAGTTTTTAACTTAAAG
66 TTTGAAAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAAAG
* *
776 ACCAAAAGTTATTTACAAAATGGCAAACTATTTAGGCCAAATG-T-TGCAATTTTTC-A--AT--
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATCTG--ATTTTTCGATCATGG
* *
834 AATGTTCAACAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAATGTTATAAA
194 AATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAA
* *
899 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGACCAAGAACCAAGATAGAAACAATTCTCAC
259 AGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCAC
* *
964 TTATTAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAACG
324 TTAATAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATG
* * * * *
1029 ATGCAATTTC-CGGAGCATGAAAAGTTCAAAAAATTGCTCAAATGAATGGACCGTGTTGAATACT
389 ATGCGATTTCTC-GAG-ATGGAATGTTCAAAAAA-TGCTCAAATGAATGGATCGTCTTGAATACT
* * *
1093 TAGAAGAATCAAAGTTATAAAAGAATTCGT--AAGTTTGACAAGTTAAGAAGTTAGGACAAAGAC
451 TAGAAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGACAAAGAC
* *
1156 CATGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
516 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * *
1221 GAAAAACTATTTAGACCAAATGAT--GATTTCCCGAGTATGGAATGTTCGAAAAAATTGTTCGAA
581 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTC-AGAAAATTGTTCAAA
1284 G
645 G
* *
1285 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGGCATA
1 GAATGGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA-A
* * *
1350 -TTT-AGACGTTCGACCAATAACCAAGAGGGAAACAATACTCAGGTAAATAAGTTTTTAATTTAA
65 GTTTGA-AAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAA
* *
1413 AGACCAAAAGTCT-TTTACAAATTGACAAACTATTTTGGCCAAATGATCTGATTTTTCGATCATG
129 AGACCAAAAGT-TGTTTACAAAATGACAAACTATTTAGGCCAAATGATCTGATTTTTCGATCATG
* * * * *
1477 GAATGTTCAAAAAATTGCTCAAAGGAATGGATCATCTTGTATATTTTAAGGAGCCAAAGATATAA
193 GAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAA
* *
1542 AAG-ACTCGTAAAAGTTTGACAAGTTTGAAAGTTCGGCCAAGAACCAAGAGAGAAACGATTCTCA
258 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCA
* *
1606 CTTAATAAGGTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACTAACTATTTAGACCAAAT
323 CTTAATAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * *
1671 GATGCGATTTCTCGAGAGTGGAATGTTCGAAAAAATGCTAAAATCAATGGATCGTCTTGAGTACT
388 GATGCGATTTCTCGAGA-TGGAATGTTC-AAAAAATGCTCAAATGAATGGATCGTCTTGAATACT
* ** * *
1736 TAGAAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGAAAAGTTAAGAAGTTAGTCCAAGGGC
451 TAGAAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGACAAAGAC
* *
1801 CAAGAGAGAAACAATGCTCACGTAAAAAAGTTTTTAATTCAAAGACCAAAATGTTGTTTACAAAA
516 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTACAAAA
* * *
1866 TGACAAACTATTTAGACCAAATGATGAGATTTCCCGAGCATGGAATGTT-TG-AAATTGTTCGAA
580 TGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGTTCAAA
1929 G
645 G
* * *
1930 GAATGGATCGTCTTGAATATTTTAAAGAACCAAAGTTATAAAAGAACTCATAAAAGTTTGACAAG
1 GAATGGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
1995 TTTGAAAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAAAG
66 TTTGAAAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAAAG
* * * *
2060 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAAGG-CTAGTGATGTGATTTTTCGATCATGCA
131 ACCAAAAGTTGTTTACAAAATGACAAACTATTT-AGGCCAAATGATCTGATTTTTCGATCATGGA
* * *
2124 ATGTTCAAATAATTGCTCGAA-GAATGGATCGTTTTGAATATTTTAAGGAACCAAAGTTATATAA
195 ATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAA
* * *
2188 GAACTCGTAAAAGTTTGACAAGATCGAAAGTTCGGCCAAGAACCAAGATAGAAACAATTCTCCCT
260 GAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACT
* *
2253 TATTAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGATCAAATGA
325 TAATAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * * *
2318 AGCGATTTCTCGAGCATGGAAAGTTCAGAAAATTGCTCAAATGAATGGA-CTGTGTTGATTATTT
390 TGCGATTTCTCGAG-ATGGAATGTTCA-AAAAATGCTCAAATGAATGGATC-GTCTTGAATACTT
* *
2382 AGAAGAACCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTACGAAGTTAGGACAAAGACC
452 AGAAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGACAAAGACC
* *
2447 ATGAGGGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
517 AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * *
2512 ACAAACTATTTAAACCAAATGATGCGATTTCCCGAGCATTGAAAGTTCAGAAAATTGCTCAAAT
582 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGTTCAAAG
* * *
2576 GAATGGATTGTCTTGAATAC-TTAGAAGAATCGAAGTTGTAAAAGAACTCGTAAAAGTTTGACAA
1 GAATGGATCGTCTTGAATACTTTA-AAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* * * * * * *
2640 G-TTAAGAAGTTAGGCCAA-AGACCATGAGAGACACAATTCTCACGTAAATAAGTTTTTAATTAA
65 GTTTGA-AAGTTCGACCAATA-ACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTA
* * ** *
2703 AAGTCCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATGC-AATTTCCCGAGCAT
128 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGAT-CTGATTTTTCGATCAT
** * * * *
2767 GGAATGTTCGGAAAATTGTTCGAAGGAATGGATAGTCTTGAATACTTTAAGGAACCGAAGTTATA
192 GGAATGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATA
* * * *
2832 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGACCAATAACCAAGAGAGAAACAATACTC
257 AAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
2897 A-TGTAAATAAGTTTTTAATTTAAAGACCAAAAGTTGTTTACAAAATGACAAACTGTTTAGGCTA
322 ACT-T-AATAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * *
2961 AAGGGTGTGATTTTTCGATCATGGAATGTTCAAAAAATTGCTCAAAGGAATGGATCGTCTTGAAT
385 AATGATGCGATTTCTCGA-GATGGAATGTTCAAAAAA-TGCTCAAATGAATGGATCGTCTTGAAT
* * * * * * *
3026 ATTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAGGTTTGACAAGTT-CGAAAGTTCGG-CC
448 A-CTTAGAAGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAG-AAGTTAGGACA
* * *
3088 AAGAACCAAGAGAGTAACTATTCTCACAT-AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
511 AAG-ACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* *
3152 CAAAATGACAAACTTTTTAGACCAAATGATTCGATTTCCCGAGCATGGAATGTTCA
575 CAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCA
Statistics
Matches: 2271, Mismatches: 241, Indels: 97
0.87 0.09 0.04
Matches are distributed among these distances:
636 15 0.01
637 3 0.00
638 183 0.08
639 106 0.05
640 263 0.12
641 2 0.00
642 5 0.00
643 193 0.08
644 169 0.07
645 672 0.30
646 278 0.12
647 191 0.08
648 186 0.08
649 5 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (645 bp):
GAATGGATCGTCTTGAATACTTTAAAGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
TTTGAAAGTTCGACCAATAACCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTTAAAG
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGGCCAAATGATCTGATTTTTCGATCATGGAA
TGTTCAAAAAATTGCTCGAAGGAATGGATCGTCTTGAATATTTTAAGGAACCAAAGTTATAAAAG
AACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGAGAGAAACAATTCTCACTT
AATAAGTTTTTAATTCAAAGACCACAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGAT
GCGATTTCTCGAGATGGAATGTTCAAAAAATGCTCAAATGAATGGATCGTCTTGAATACTTAGAA
GAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTAAGAAGTTAGGACAAAGACCAAGA
GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAA
ACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCAGAAAATTGTTCAAAG
Done.