Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005083.1 Kokia drynarioides strain JFW-HI SEQ_118894, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1050
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38


Found at i:55 original size:19 final size:20

Alignment explanation


    Indices: 17--59  Score: 61
    Period size: 19  Copynumber: 2.1  Consensus size: 20

          7 AATAAAAAAT

                           *     
         17 ATTTAAAATTTTATTTCTAAA
          1 ATTTAAAA-TTTATTCCTAAA

                                
         38 ATTTAAAA-TTATTCCTAAA
          1 ATTTAAAATTTATTCCTAAA

               
         57 ATT
          1 ATT

         60 GAAGTTAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19   13  0.62
  21    8  0.38

ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49


Consensus pattern (20 bp):   
ATTTAAAATTTATTCCTAAA
Done.