Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01005086.1 Kokia drynarioides strain JFW-HI SEQ_118900, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12101
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:723 original size:15 final size:15
Alignment explanation
Indices: 703--731 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
693 TCAAGATGAT
703 TCTTCCAACAAGCTG
1 TCTTCCAACAAGCTG
718 TCTTCCAACAAGCT
1 TCTTCCAACAAGCT
732 ATCCCACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.34, G:0.10, T:0.28
Consensus pattern (15 bp):
TCTTCCAACAAGCTG
Found at i:1211 original size:216 final size:214
Alignment explanation
Indices: 740--4386 Score: 2977
Period size: 216 Copynumber: 16.7 Consensus size: 214
730 CTATCCCACA
* * * *
740 TAAATAAGTTTTTCATTCAAAGACCAAAAGTAGTTTAGAAAATGACAAAGTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * *
805 ATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCTCTAAGGCAT-G-TC--C-TGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * ** * * * * ** ** *
865 TAAGAAACCGAAGGTGTTGAATAGCTCGTAAAAGTTTGTAAAGTTTGGAAGTTCATCTAAGAACC
131 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTATCAAGTTCAGAAGTTTGTCCAAGAA-C
* * *
930 AAGAGAAAAACAACTCTGACA
194 AAGAGAGAAACAACTCTCACG
* * * **
951 AAAATAGGTTTTTTATTCAAAGATAAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * * *
1016 ATGCGATTTCCCGTGCATTGAATGCTCGAAAATTTGCTCGAAGGAATGGACCGTCATGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * *
1081 TAAGGAATTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGTTCAGAAGTTTGTCCAAGAACA
131 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT-ATCAAGTTCAGAAGTTTGTCCAAGAACA
*
1146 AGGAGAGAAACAATTCTCACG
195 A-GAGAGAAACAACTCTCACG
** * * * * * * * *
1167 TAAATAAAATTTTAATTTAGAGACTAAAATTTGTTTACAAAATGACAAGCTATTTAAACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * * * *
1232 ATGCGATTTCTCGAGTATGGAATATTCGAAAAATTGCTTGAAGGAATGGATTGTCATGAATGCTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * * * *
1297 TAAGGAAC-GAAAGTTATAGATGAACTGGTAATAGTTTTCCAAGTTCAGAAGTTCGTCCAAGATC
131 TAAGGAACTG-AAGTTATAAAAGAACTCGTAAAAGTTAT-CAAGTTCAGAAGTTTGTCCAAGA-A
*
1361 CAAGAGAGAAACAACTCTCACA
193 CAAGAGAGAAACAACTCTCACG
* * *
1383 TAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAAGTATTTAGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * ** * * * *
1448 ATGCGATTTTCGGAGCATAGAATGTTTAAAAAATTGCTCTAAGGAATGGATTGTCCTAAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * ** * **
1513 TAAGAAACCGAAGTTATTGAAGAACTCATAAAAGTTAGTCAAGTTTGGAAGTTCATGT--AAGAA
131 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTA-TCAAGTTCAGAAGTT--TGTCCAAGAA
*
1576 CCAAGAGAAAAACAACTCTCACG
193 -CAAGAGAGAAACAACTCTCACG
* * *
1599 TAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGAAAAACAATTTAGACAAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * * *
1664 ATGCGATTTCCCGTGCGTGGAATGTTTGAAAATTTGCTCGAAGGAATTGATCGTCATGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * * *
1729 TAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGTTCGGAAGTTTGTCCAAGAAAA
131 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT-ATCAAGTTCAGAAGTTTGTCCAAG-AAC
*
1794 AAGAGAGAAACAATTCTCACG
194 AAGAGAGAAACAACTCTCACG
* * * * * *
1815 TAAATAAGATTTTAATTTAAAGACCAAAAGTTGTATACAAAATGACAAACTATTTAGACCAAATA
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * * *
1880 ATGCGATTTCCCGAGCATGGAAAGTTC-AGAATATTGCTTGAAGAAATGGATTGTCATGAATACT
66 ATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* * * * *
1944 TTAAGGAAC-GAAAGTTATAAATGAACTGGTAAATGTTTTCCAAGTTCAAAAGTTTGTCCAAGAA
130 TTAAGGAACTG-AAGTTATAAAAGAACTCGTAAAAGTTAT-CAAGTTCAGAAGTTTGTCCAAGAA
2008 CCAAGAGAGAAACAACTCTCACG
193 -CAAGAGAGAAACAACTCTCACG
* * *
2031 TAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAA-T-TATAGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* ** * ** *
2094 ATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTATAAGGAATGAATTTTCTTGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * ** *
2159 TAA-GAAATAGAAGTTAGAGAAGAACTCGTAAAAGTATGTCAAGTTTGGAAGTTCGTCCAAGAAC
131 TAAGGAACT-GAAGTTATAAAAGAACTCGTAAAAGT-TATCAAGTTCAGAAGTTTGTCCAAGAA-
2223 CAAGAGAGAAACAACTCTCACG
193 CAAGAGAGAAACAACTCTCACG
* * *
2245 TAAATAGGTTTTTAATTAAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACATAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * ** * *
2310 ATACGATTTCCCGTGCTTGGAATGTAT-GGGAAATTGCTCTAAGGAATGCATCGTCATGAATACT
66 ATGCGATTTCCCGAGCATGGAATGT-TCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* * * ** *
2374 TTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAACTTCATCAAGTTCAAAAGTTAATTCAAGAAC
130 TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT-ATCAAGTTCAGAAGTTTGTCCAAGAAC
*
2439 AAATAGAGAAACAACTCTCACG
194 -AAGAGAGAAACAACTCTCACG
* * * * *
2461 TAAATAACTTTTTAACTT-ATAGACCAAAAGTTGTTTACAAAATGACAAAATATTTAGACTAAAT
1 TAAATAAGTTTTTAA-TTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAAT
* * * * *
2525 TATGTGATTTCCCGACCATGGAATGTTCGAAAAATTACTCGAAGGAATGGATTGTCATGAATACT
65 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* ** * * * * * * * *
2590 TTAATGAACCAAAGTTATAGAACAACTGGTAAAATTTTGTGAAGTTC-GAAAGTTTGTCCATGGT
130 TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAA-GTTATCAAGTTCAG-AAGTTTGTCCA-AGA
* * * *
2654 CCAAGTGATAATA-AATTCTCACG
192 ACAAGAGAGAA-ACAACTCTCACG
* * * ** *
2677 TAAATTAGTTTTTAATTCAATGACCAAAAGTTGTATACCAAATGACAAACTATTTAGAAAAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * *
2742 ATGTGATTTCCCAAGCATGGAATGTT-TAGAAAATTACTCGAAGGAATGGATCGTCATGAATACT
66 ATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* * * * * * ** * *
2806 TTAAAGAACCGAAGTTATAGAAGAACTCGTCAAAGTTTGTCAAGTTTAGAAGTTCATCCAATATC
130 TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTATCAAGTTCAGAAGTTTGTCCAAGA-A
* *
2871 CAAGAGAGAAACAATTCTCATG
193 CAAGAGAGAAACAACTCTCACG
* ** *
2893 TAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTACCAAATGACAAA-TAGTTTAGAAAAAAT
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTA-TTTAGACAAAAT
* * * *
2957 TATGCGATTTCCCAAGCATGAAATGTTCGAAAAATTGCTCGAAAGAATGGATCGTCATGAATACT
65 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* * * *
3022 TTATGGAACTGAAGTTATAAAAGAACTTGTAAAAGTT-TGCCAAG-ACAAAAGTTTGTCCAAGAA
130 TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTAT--CAAGTTCAGAAGTTTGTCCAAGAA
* *
3085 CCAGGATAGAAACAACTCTCACG
193 -CAAGAGAGAAACAACTCTCACG
* * * * **
3108 TAAATAAGTTTTTCATTCAAAGATCAAAAGTAGTTTAGAAAATGACAAAGTATTTAGACCGAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * *
3173 ATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCCTGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * * ** ** * *
3238 TAAGAAACTGAAGTTATTAAAGAACTCATAAAAGTTTGTAAAGTTTGGAAGTTCATCTAAAAACC
131 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAG-TTATCAAGTTCAGAAGTTTGTCCAAGAA-C
* * * *
3303 AAGAGAAAAACAATTCTGACA
194 AAGAGAGAAACAACTCTCACG
* * ** *
3324 AAAAT-AGGTTTTAATTCAAAGATAAAAAGTTTTTTAGAAAATGACAAACTATTTAGACAAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* *
3388 ATGCGATTTCCCGTGCATGGAATGTTC-AGAAAATTGCACGAAGGAATGGATCGTCATGAATACT
66 ATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* * * * * * * *
3452 TTAAGGAACTAAAGTTTTAGAAGAACTTGCAAAACTTCATCATGTTCGGAAGTTT-TCCAAGAAC
130 TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT-ATCAAGTTCAGAAGTTTGTCCAAGAAC
3516 AAAGAGAGAAACAA-T-T--CG
194 -AAGAGAGAAACAACTCTCACG
* * * * * * * * * *
3534 -AAATAACTTTCGTTCAGAAAATTTAGAGACCAAAATTTGTTTACAAAATTTAGAGACCATTTTG
1 TAAATAAGTTT--TT-----AATTCAAAGACCAAAAGTTGTTTAGAAAA-TGACAAACTATTTAG
* * ** ** * * * * *
3598 TTAAGAAAATTTAGA-GACCAAAATTTGTTTAC-AAAATGACAAACTATTTAGACCAAA-TGAT-
58 ---ACAAAA--T-GATG--C--GA--T-TTCCCGAGCATG--GAA-T-GTTCGA-AAAATTGCTC
* ** ** * * * *
3659 GATATTTCCCGAGCATGGAATATTCGAAAAATTGCTTGAAGG-AGTGGATTGTCATGAATACTTT
105 GA-A------G-GAATGG-ATCGTC-ATGAA-TACTTTAAGGAACT-GA-AGT--T--ATA----
* * *
3723 AAGGAA--CG--AAAGTTATAAATGAACTGGT-AAAAGTTTTTCAAGTTCAGAAGTTCGTCCAAG
149 AAAGAACTCGTAAAAGTTATCAA-G---T--TCAGAAG-T---------------TT-GTCCAAG
*
3783 AACCCAGAGAGAAACAACTCTCACG
191 AA-CAAGAGAGAAACAACTCTCACG
* *
3808 TAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAAGTATTTAGA-ACAAAT
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACA-AAAT
* * * * * *
3872 GATGCGATTTCCGGAGCATAGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCCTGAATACT
65 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACT
* * ** ** ** *
3937 TTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTAGTCAAGTTTGGAAGTTCATCTAAGAAC
130 TTAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTA-TCAAGTTCAGAAGTTTGTCCAAGAA-
4002 CAAGAGA-AAACAACTCTCACG
193 CAAGAGAGAAACAACTCTCACG
* * *
4023 TAAATAGGTTTTTAATTTAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACAAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * * * *
4088 ATGCGATTTCCCGTGCACGGAATGTTTGAAAATTTGCTCGAAGGAATGGATCATCATGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
* * * * * *
4153 TAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATCAAGTTCGGAAGTATGTCCAAGAACA
131 TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTT-ATCAAGTTCAGAAGTTTGTCCAAGAAC-
*
4218 AAGAGAGAAACAATTCTCACG
194 AAGAGAGAAACAACTCTCACG
* * * * * * * * *
4239 TAAATAAGATTTTCATTTAGAGACCAAAATTTGTTTACAATATGACAAACTATTTGGACCAAATG
1 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
* * *
4304 ATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTT
66 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
4369 TAAGGAAC-GAAAGTTATA
131 TAAGGAACTG-AAGTTATA
4387 GATGAACTTA
Statistics
Matches: 2744, Mismatches: 540, Indels: 299
0.77 0.15 0.08
Matches are distributed among these distances:
209 4 0.00
210 4 0.00
211 96 0.03
212 4 0.00
213 6 0.00
214 204 0.07
215 531 0.19
216 1604 0.58
217 46 0.02
218 12 0.00
221 5 0.00
223 2 0.00
224 2 0.00
225 1 0.00
227 1 0.00
229 4 0.00
230 3 0.00
231 2 0.00
232 5 0.00
233 12 0.00
234 5 0.00
235 2 0.00
237 10 0.00
238 3 0.00
239 2 0.00
240 5 0.00
241 6 0.00
242 14 0.01
243 12 0.00
244 6 0.00
245 5 0.00
246 2 0.00
247 3 0.00
248 8 0.00
250 1 0.00
251 4 0.00
252 14 0.01
253 4 0.00
254 2 0.00
255 2 0.00
256 4 0.00
258 1 0.00
260 1 0.00
261 2 0.00
262 2 0.00
263 1 0.00
264 4 0.00
267 9 0.00
268 26 0.01
270 20 0.01
271 2 0.00
272 1 0.00
273 2 0.00
274 2 0.00
275 9 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (214 bp):
TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACAAAATG
ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCATGAATACTT
TAAGGAACTGAAGTTATAAAAGAACTCGTAAAAGTTATCAAGTTCAGAAGTTTGTCCAAGAACAA
GAGAGAAACAACTCTCACG
Found at i:1759 original size:648 final size:647
Alignment explanation
Indices: 736--4376 Score: 3559
Period size: 648 Copynumber: 5.6 Consensus size: 647
726 CAAGCTATCC
* *
736 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTAGTTTAGAAAATGACAAAGTATTTAGACCA
1 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
* * *
801 AATGATGCGATTTCCCAAGCATGGAATGTTCAAAAAATTGCTCTAA-G---GCA-TGTCCTGAAT
66 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
* * * * * * *
861 ACTTTAAGAAACCGAAGGTGTTGAATAGCTCGTAAAAGTTTGTAAAGTTTGGAAGTTCATCTAAG
131 ACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTAGTCAAGTTTGGAAGTTCATCCAAG
* ** * **
926 AACCAAGAGAAAAACAACTCTGACAAAAATAGGTTTTTTATTCAAAGATAAAAAGTTGTTTAGAA
196 AACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAA
* * *
991 AATGACAAACTATTTAGACAAAATGATGCGATTTCCCGTGCATTGAATGCTCGAAAATTTGCTCG
261 AATGACAAACAATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGAAAATTTGCTCG
* *
1056 AAGGAATGGACCGTCATGAATACTTTAAGGAATTGAAGTTTTAAAAGAACTTGCAAAACTTCATC
326 AAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATC
* * * *
1121 AAGTTCAGAAGTTTGTCCAAGAACAAGGAGAGAAACAATTCTCACGTAAATAAAATTTTAATTTA
391 AAGTTCAAAAGTTTGTCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAAGATTTTAATTTA
* * * * * * *
1186 GAGACTAAAATTTGTTTACAAAATGACAAGCTATTTAAACCAAATGATGCGATTTCTCGAGTATG
456 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
*
1251 GAATATTCGAAAAATTGCTTGAAGGAATGGATTGTCATGAATGCTTTAAGGAACGAAAGTTATAG
521 GAATATTCGAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAACGAAAGTTATAG
* *
1316 ATGAACTGGTAATAGTTTTCCAAGTTCAGAAGTTCGTCCAAGATCCAAGAGAGAAACAACTCT
586 AAGAACTGGTAA-AGTTTTCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCT
*
1379 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAAGTATTTAGACCA
1 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
* * * * * *
1444 AATGATGCGATTTTCGGAGCATAGAATGTTTAAAAAATTGCTCTAAGGAATGGATTGTCCTAAAT
66 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
* **
1509 ACTTTAAGAAACCGAAGTTATTGAAGAACTCATAAAAGTTAGTCAAGTTTGGAAGTTCATGTAAG
131 ACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTAGTCAAGTTTGGAAGTTCATCCAAG
1574 AACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAA
196 AACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAA
* * *
1639 AATGAAAAACAATTTAGACAAAATGATGCGATTTCCCGTGCGTGGAATGTTTGAAAATTTGCTCG
261 AATGACAAACAATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGAAAATTTGCTCG
*
1704 AAGGAATTGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATC
326 AAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATC
** * *
1769 AAGTTCGGAAGTTTGTCCAAGAAAAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTAATTTA
391 AAGTTCAAAAGTTTGTCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAAGATTTTAATTTA
* *
1834 AAGACCAAAAGTTGTATACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCCCGAGCATG
456 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
* *
1899 GAA-AGTTC-AGAATATTGCTTGAAGAAATGGATTGTCATGAATACTTTAAGGAACGAAAGTTAT
521 GAATA-TTCGA-AAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAACGAAAGTTAT
* *
1962 A-AATGAACTGGTAAATGTTTTCCAAGTTCAAAAGTTTGTCCAAGAACCAAGAGAGAAACAACTC
584 AGAA-GAACTGGTAAA-GTTTTCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTC
2026 T
647 T
* *
2027 CACGTAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAA-T-TATAGACCA
1 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
* * * *
2090 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTATAAGGAATGAATTTTCTTGAAT
66 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
** ** *
2155 ACTTTAAGAAATAGAAGTTAGAGAAGAACTCGTAAAAG-TATGTCAAGTTTGGAAGTTCGTCCAA
131 ACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTA-GTCAAGTTTGGAAGTTCATCCAA
* *
2219 GAACCAAGAGAGAAACAACTCTCACGTAAATAGGTTTTTAATTAAAAGACCAAAAGTTGTTTAGA
195 GAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGA
* * * * * *
2284 AAATGACAAACTATTTAGACATAATGATACGATTTCCCGTGCTTGGAATGTATGGGAAA-TTGCT
260 AAATGACAAACAATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGT-TCGAAAATTTGCT
* * * *
2348 CTAAGGAATGCATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTCGTAAAACTTCA
324 CGAAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCA
** * * ** *
2413 TCAAGTTCAAAAGTTAATTCAAGAACAAATAGAGAAACAACTCTCACGTAAATAACTTTTTAACT
389 TCAAGTTCAAAAGTTTGTCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAAGATTTTAATT
* * * * * *
2478 TATAGACCAAAAGTTGTTTACAAAATGACAAAATATTTAGACTAAATTATGTGATTTCCCGACCA
454 TAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * * *
2543 TGGAATGTTCGAAAAATTACTCGAAGGAATGGATTGTCATGAATACTTTAATGAACCAAAGTTAT
519 TGGAATATTCGAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAACGAAAGTTAT
* * ** * * ** * * *
2608 AGAACAACTGGTAAAATTTTGTGAAGTTC-GAAAGTTTGTCCATGGTCCAAGTGATAATA-AATT
584 AGAAGAACTGGTAAAGTTTT-CCAAGTTCAG-AAGTTCGTCCAAGAACCAAGAGAGAA-ACAACT
2671 CT
646 CT
* * * * * ** **
2673 CACGTAAATTAGTTTTTAATTCAATGACCAAAAGTTGTATACCAAATGACAAACTATTTAGAAAA
1 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
* * * * * * *
2738 AATGATGTGATTTCCCAAGCATGGAATGTTTAGAAAATTACTCGAAGGAATGGATCGTCATGAAT
66 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
* * * *
2803 ACTTTAA-AGAACCGAAGTTATAGAAGAACTCGTCAAAGTTTGTCAAGTTTAGAAGTTCATCCAA
131 ACTTTAAGA-AACCGAAGTTATTGAAGAACTCGTAAAAGTTAGTCAAGTTTGGAAGTTCATCCAA
* * * * * * * **
2867 TATCCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTACC
195 GAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGA
* * * * ** * *
2932 AAATGACAAATAGTTTAGAAAAAATTATGCGATTTCCCAAGCATGAAATGTTCGAAAAATTGCTC
260 AAATGACAAACAATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGAAAATTTGCTC
* * * * * ***
2997 GAAAGAATGGATCGTCATGAATACTTTATGGAACTGAAGTTATAAAAGAACTTGTAAAAGTTTGC
325 GAAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCAT
* * * * * * *
3062 CAAG-ACAAAAGTTTGTCCAAGAACCAGGATAGAAACAACTCTCACGTAAATAAGTTTTTCATTC
390 CAAGTTCAAAAGTTTGTCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAAGATTTTAATTT
* * * * *
3126 AAAGATCAAAAGTAGTTTAGAAAATGACAAAGTATTTAGACCGAATGATGCGATTTCCCGAGCAT
455 AAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCAT
* * * *
3191 GGAATGTTCAAAAAATTGCTCT-AAGGAATGGATTGTCCTGAATACTTTAAGAAACTG-AAGTTA
520 GGAATATTCGAAAAATTGCT-TGAAGGAATGGATTGTCATGAATACTTTAAGGAAC-GAAAGTTA
** * ** * * * * *
3254 TTA-AAGAACTCATAAAAGTTTGT-AAAGTTTGGAAGTTCATCTAAAAACCAAGAGAAAAACAAT
583 -TAGAAGAACTGGT-AAAGTTT-TCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAC
3317 TCT
645 TCT
* * * * ** * *
3320 GACAAAAAT-AGGTTTTAATTCAAAGATAAAAAGTTTTTTAGAAAATGACAAACTATTTAGACAA
1 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
* * * * *
3384 AATGATGCGATTTCCCGTGCATGGAATGTTCAGAAAATTGCACGAAGGAATGGATCGTCATGAAT
66 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
* ** * * * * * *
3449 ACTTTAAGGAACTAAAGTT-TTAGAAGAACTTGCAAAACTTCA-TCATGTTCGGAAGTT-TTCCA
131 ACTTTAAGAAACCGAAGTTATT-GAAGAACTCGTAAAAGTT-AGTCAAGTTTGGAAGTTCATCCA
* * ** * * *
3511 AGAACAAAGAGAGAAACAA-T-T--CG-AAATAACTTTCGTTCAGAAAATTTAGAGACCAAAATT
194 AGAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTT--TT-----AATTCAAAGACCAAAAGT
* *
3571 TGTTTACAAAATTTAGAGACCATTTTGTTAAGAAAATTTAGAGACCAAAATTTGTTTACAAAATG
252 TGTTTAGAAAA--T---GA-C--------AA-ACAATTT--AGA-CAAAA--TG--------ATG
* ** *
3636 ACAAACTATTTAGACCAAATG-AT-GATAT-TTCCCGAGCATGGAATAT--TCGAAAAATTGCTT
289 -----CGATTT---CC-CGTGCATGGA-ATGTT--CGA--A---AATTTGCTCG---AA--G---
* * * * * * **
3696 GAAGGAGTGGATTGTCATGAATACTTTAAGGAAC-GAAAGTTATAAATGAACTGGTAAAAGTTTT
329 G-A--A-TGGATCGTCATGAATACTTTAAGGAACTG-AAGTTTTAAAAGAACTTGCAAAACTTCA
* * ** * *
3760 TCAAGTTCAGAAGTTCGTCCAAGAACCCAGAGAGAAACAACTCTCACGTAAATAAGTTTTTCATT
389 TCAAGTTCAAAAGTTTGTCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAAGATTTTAATT
* * * * *
3825 CAAAGACCAAAAGTTGTTTAGAAAATGACAAAGTATTTAGAACAAATGATGCGATTTCCGGAGCA
454 TAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA
* * * * *
3890 TAGAATGTTCAAAAAATTGCTCT-AAGGAATGGATTGTCCTGAATACTTTAAGAAACCG-AAGTT
519 TGGAATATTCGAAAAATTGCT-TGAAGGAATGGATTGTCATGAATACTTTAAGGAA-CGAAAGTT
* * * ** * *
3953 ATTGAAGAACTCGTAAAAGTTAGT-CAAGTTTGGAAGTTCATCTAAGAACCAAGAGA-AAACAAC
582 ATAGAAGAACTGGT-AAAGTT-TTCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAAC
4016 TCT
645 TCT
* * * * * *
4019 CACGTAAATAGGTTTTTAATTTAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACAA
1 CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
* * ** * * **
4084 AATGATGCGATTTCCCGTGCACGGAATGTTTGAAAATTTGCTCGAAGGAATGGATCATCATGAAT
66 AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
* * * * * * * *
4149 ACTTTAAGGAACTGAAGTT-TTAAAAGAACTTGCAAAACTTCA-TCAAGTTCGGAAGTAT-GTCC
131 ACTTTAAGAAACCGAAGTTATT-GAAGAACTCGTAAAAGTT-AGTCAAGTTTGGAAGT-TCATCC
* * * * * * * * *
4211 AAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGATTTTCATTTAGAGACCAAAATTTGTTTA
193 AAGAACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * * * *
4276 CAATATGACAAACTATTTGGACCAAATGATGCGATTTCCCGAGCATGGAATATTCGAAAAATTGC
258 GAAAATGACAAACAATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGAAAATTTGC
* *
4341 TTGAAGGAATGGATTGTCATGAATACTTTAAGGAAC
323 TCGAAGGAATGGATCGTCATGAATACTTTAAGGAAC
4377 GAAAGTTATA
Statistics
Matches: 2550, Mismatches: 335, Indels: 222
0.82 0.11 0.07
Matches are distributed among these distances:
640 9 0.00
641 1 0.00
642 2 0.00
643 106 0.04
644 2 0.00
645 27 0.01
646 695 0.27
647 272 0.11
648 812 0.32
649 3 0.00
650 1 0.00
651 1 0.00
652 2 0.00
653 1 0.00
654 1 0.00
656 2 0.00
657 3 0.00
659 2 0.00
660 1 0.00
661 2 0.00
662 9 0.00
663 6 0.00
664 7 0.00
665 4 0.00
666 5 0.00
667 1 0.00
671 3 0.00
675 3 0.00
679 2 0.00
680 5 0.00
681 4 0.00
682 5 0.00
683 6 0.00
684 10 0.00
685 2 0.00
686 1 0.00
687 3 0.00
689 3 0.00
690 2 0.00
693 1 0.00
694 2 0.00
695 1 0.00
696 1 0.00
697 1 0.00
698 2 0.00
699 97 0.04
700 380 0.15
701 25 0.01
702 1 0.00
703 1 0.00
704 2 0.00
705 2 0.00
706 8 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (647 bp):
CACATAAATAAGTTTTTCATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCTAAGGAATGGATTGTCATGAAT
ACTTTAAGAAACCGAAGTTATTGAAGAACTCGTAAAAGTTAGTCAAGTTTGGAAGTTCATCCAAG
AACCAAGAGAAAAACAACTCTCACGTAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAA
AATGACAAACAATTTAGACAAAATGATGCGATTTCCCGTGCATGGAATGTTCGAAAATTTGCTCG
AAGGAATGGATCGTCATGAATACTTTAAGGAACTGAAGTTTTAAAAGAACTTGCAAAACTTCATC
AAGTTCAAAAGTTTGTCCAAGAACAAAGAGAGAAACAACTCTCACGTAAATAAGATTTTAATTTA
AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATG
GAATATTCGAAAAATTGCTTGAAGGAATGGATTGTCATGAATACTTTAAGGAACGAAAGTTATAG
AAGAACTGGTAAAGTTTTCCAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAACTCT
Found at i:3073 original size:16 final size:17
Alignment explanation
Indices: 3052--3083 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
3042 AAGAACTTGT
3052 AAAAGTTTG-CCAAGAC
1 AAAAGTTTGTCCAAGAC
3068 AAAAGTTTGTCCAAGA
1 AAAAGTTTGTCCAAGA
3084 ACCAGGATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.22
Consensus pattern (17 bp):
AAAAGTTTGTCCAAGAC
Found at i:3589 original size:27 final size:27
Alignment explanation
Indices: 3551--3634 Score: 127
Period size: 27 Copynumber: 3.2 Consensus size: 27
3541 TTTCGTTCAG
3551 AAAATTTAGAGACCAAAATTTGTTTAC
1 AAAATTTAGAGACCAAAATTTGTTTAC
* * *
3578 AAAATTTAGAGACC--ATTTTGTTAAG
1 AAAATTTAGAGACCAAAATTTGTTTAC
3603 AAAATTTAGAGACCAAAATTTGTTTAC
1 AAAATTTAGAGACCAAAATTTGTTTAC
3630 AAAAT
1 AAAAT
3635 GACAAACTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
25 22 0.45
27 27 0.55
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (27 bp):
AAAATTTAGAGACCAAAATTTGTTTAC
Found at i:3606 original size:25 final size:25
Alignment explanation
Indices: 3549--3618 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 25
3539 ACTTTCGTTC
*
3549 AGAAAATTTAGAGACCAAAATTTGTTT
1 AGAAAATTTAGAGACC--AATTTGTTA
* *
3576 ACAAAATTTAGAGACCATTTTGTTA
1 AGAAAATTTAGAGACCAATTTGTTA
3601 AGAAAATTTAGAGACCAA
1 AGAAAATTTAGAGACCAA
3619 AATTTGTTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
25 23 0.61
27 15 0.39
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (25 bp):
AGAAAATTTAGAGACCAATTTGTTA
Found at i:7498 original size:216 final size:215
Alignment explanation
Indices: 6604--12101 Score: 5163
Period size: 216 Copynumber: 25.5 Consensus size: 215
6594 TATTTAGTTT
* * *
6604 ATTTTTTGATCATTCCATGCTCGGGAAATCGCATCATT-TGTTCTAAATAATTTGTCATTTTCTA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATG-TCTAAATAGTTTGTCATTTTCTA
** * * * * * *
6668 AACTCCTTTTGGTCTTTCAATGAAAAACTTATTAACGTGAGAGTTGTTTCTATCTTGGTTTTTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
* * * * *
6733 ACAAACTTTCGAACTTGGCAAACTTTTACGAGTTCTTTTATAACTT-ATGTTCCATAAAGTATTC
130 ACGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCA-GTTCCTTAAAGTATTC
*
6797 ATGACGATCCATTCTTTCGAGCA
194 ATGACGATCC-TTCCTTCGAGCA
* * * ** * *
6820 ATTTTCCAAACATTTCATGCTTAGGAAATCGCATCATTTTTTCTAAACTA-----T--TTTTC--
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAA-TAGTTTGTCATTTTCTA
* * * * * * * *
6876 -ACAACTTTTGGTCTTTGAATGAAAAACTTATTTTCATGAGAATTGTTCCTCTCTTGGATATTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
* * * * * * * * *
6940 ATGAAC-TTCTAAATTTGACAAACTTTGATGAGTTCTTCTAAAACTTCGGTTCTTTAAAGTATTC
130 ACGAACTTTC-GAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
*
7004 ATGATGATCCATTCCTTCGAGCA
194 ATGACGATCC-TTCCTTCGAGCA
* * * **
7027 A-TTTTCTGAACATTCCATGCTTGGGAAATCACATCATTTTGTCTAAATAGTTTGTCATTTGGTA
1 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTA
* * * * * *
7091 TACAACTTTTGGTCGT-TCAATTAAAAACTTATTTACATGAGAATT-TATTAC-CTCTTGGATCA
65 AACAACTTTTGGTC-TATGAATTAAAAACTTATTTACGTGAGAGTTGT-TT-CTCTCTTGGTTCT
* * * * ** * * * ** *
7153 TGGACAAATTTTCGAACGTCACTAACTTTTTACCAGTTGTTTTATAACTTTGGTTCATTAAAGTA
127 TGGACGAACTTTCGAACTTGAC-AAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTA
* *
7218 TTCATGCCGATCCTTTACTTCGAGCA
191 TTCATGACGATCC-TTCCTTCGAGCA
* * * * *
7244 ATTTTCCAAACATTCCAAGCACGGGGAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
* * *
7309 ACAACTTTTGGTCTATAAATTAAAAAGTTATTTACGTGAGAGTTGTTTCTCTCTTTGTTCTTGGA
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
* *
7374 CGAACTTTCGAACTTGACGAAGTTTCACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
131 CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
*
7439 GATGATCCTTCCCTTCGAGCA
196 GACGATCCTT-CCTTCGAGCA
* * *
7460 ATTTTTCGAACATTCCAAGCACGGGGAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
* * *
7525 ACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTTTTCTCTTGGTTCTTGG
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTG-TTTCTCTCTTGGTTCTTGG
* * * * * * *
7590 ATGAAC-TTCTAAACTTGGA-AAAATTAT-C-AGTTCATCTATAACTTTC-GTTCCTTAAAGTAT
130 ACGAACTTTC-GAACTT-GACAAAGTTTTACGAGTTCTTTTAAAAC-TTCAGTTCCTTAAAGTAT
* * *
7650 TCATGACAATCCATTCCTTCAAACA
192 TCATGACGATCC-TTCCTTCGAGCA
* * *
7675 A-TTTTCTGAACATTCCATGCTCGGGAAAACACATCATT-TGGTCTAAATAGTTTGTCATTTTTG
1 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTAT-GTCTAAATAGTTTGTCA-TTTTC
* * * * * * *
7738 TAAACAACTTATGATCTCTAAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTAT-GTTCT
63 TAAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCT-TGGTTCT
** * *
7802 TGGACGAAC-TTCTGAACTTGATGAAGTTTTACGAGTTCTTTTAAAACTTCAATTCCTTAAAGAA
127 TGGACGAACTTTC-GAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTA
* *
7866 TTCATG-CTGATCCTTTCTTTCGAGTA
191 TTCATGAC-GATCC-TTCCTTCGAGCA
* * * * * *
7892 ATTTTTCGAACATTCCAAGCACGGGGAATCGCATTATTATGACTAAATAGTTTGTCATTTTTTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
** * * * * * * *
7957 ACAACTTTTTATCTTTGAATCAAAAACCTATTTACGCGAGGGTTGTTTTTCTCTTGGTTCTTAGA
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
* * * * * ** *
8022 TGAACTTCCAAACTTGACAAACTTTTACGAGTTC-TTCAATAACTTTGGTTTCTTAAAGTATTCA
131 CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAA-AACTTCAGTTCCTTAAAGTATTCA
* * *
8086 GGACAATCCATTCCTTAGAGCA
195 TGACGATCC-TTCCTTCGAGCA
* * * *
8108 ATTTTTTGAACATTTCATGCTCGGGAAATCGCATCATT-TGGTCTAAATACTTAGTCATTTTCTA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTAT-GTCTAAATAGTTTGTCATTTTCTA
* * * * * * *
8172 AACTAA-TTTTGGTCTTTGAATGAAAAACTTATTCACGTTAGAGTTGTTTTTGTATTGGTTCTTG
65 AAC-AACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTG
* * * * *
8236 GACGAACTTCCGAACTTGGCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCATAAAGTATTC
129 GACGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
* *
8301 ATGACAATCCACTCCTTCGAGCA
194 ATGACGATCC-TTCCTTCGAGCA
* * * * * * **
8324 ATTTTTCGAACATTTCATGCTTGGAAAATCGCATAATTTTTTCTAAACTA-TTTGTCATTTGGTA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAA-TAGTTTGTCATTTTCTA
* * * * * * *
8388 AACAACTTTTGGTCTATGAATGAAAAA-TTATTTACATGAGAATTATTCCTCTCTTGGATATTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
* * * * * * ** *
8452 ATGAAC-TTCAAAACTTGACAAACTTTGACGAGTTCTTCTATAACTTTGGTTCTTTAAAGTATTC
130 ACGAACTTTC-GAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
8516 ATGACGATCCATTCCTTCGAGCA
194 ATGACGATCC-TTCCTTCGAGCA
** * * **
8539 A-TTTTCTGAACATTCCATGCTTTGGAAATCACATCATTTTGTCTAAATAGTTTGTCATTTGGTA
1 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTA
* * * * *
8603 TACAACTTTTGGTC-ATTGAATTAAAAACTTATTTACGTGAGAATT-TATTAC-CTCTTAGATCA
65 AACAACTTTTGGTCTA-TGAATTAAAAACTTATTTACGTGAGAGTTGT-TT-CTCTCTTGGTTCT
* * * * * * * ** *
8665 TGGACAAACTTTCGAACGTCACAAACTTTTTACCAGTTGTTTTATAACTTTGGTTCATTAAAGTA
127 TGGACGAACTTTCGAACTTGACAAA-GTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTA
* * *
8730 TTCATGTCGATCCTTTACTTCGAGAA
191 TTCATGACGATCC-TTCCTTCGAGCA
* * * * * * *
8756 ATTTTCCAAACAATCCAAGCACGGTG-AATCACATCATTATGTCTAAATAGTTGGTCATTTTCTA
1 ATTTTTCGAACATTCCATGCTCGG-GAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTA
* * * * *
8820 AATAACTTTTGGTCTATAAATTAAGAAGTTATTTACGTGAGAGTTGTTTCTCTCTTTGTTCTTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
* * * *
8885 ATGAACTTCCAAACTTGACGAA-TTTTCACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
130 ACGAACTTTCGAACTTGACAAAGTTTT-ACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
8949 ATGACGATCCTTTCCTTCGAGCA
194 ATGACGATCC-TTCCTTCGAGCA
* * * * * * *
8972 ATTGTTCGAACATTCTAAGCACGGGGAATCGCATCATTATATCTAAATAGTTTGTCA-TTTCTAC
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
* * * * *
9036 ACAACTTTTGGTCTATAAATTTAAAAGTTATTTATGTGAGAGTTGTTTTCTCTCTTTGTTCTTGG
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTG-TTTCTCTCTTGGTTCTTGG
* * * *
9101 ACGAAC-TTCTAAACTTGACGAAGTTTCACAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
130 ACGAACTTTC-GAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
* *
9165 AAGATGATCCTTCCCTTCGAGCA
194 ATGACGATCCTT-CCTTCGAGCA
* * * *
9188 ATTTTTCGAACATTCCAAT-CACGGGGAATCGCATCATTATATCTAAATAGTTTGTCATTTTGTA
1 ATTTTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTA
* * ** *
9252 AACAACTTTTGGTCTTTGAATGAAAAACTTATTTATTTGAGAGTTGTTTTTTCTCTTGGTTCTTG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTG-TTTCTCTCTTGGTTCTTG
* * * *
9317 GACGAAC-TTCTGAACTTGGA-AAA-TTTTACCAGTTCATCTATAACTTTCA-TTCCTTAAAGTA
129 GACGAACTTTC-GAACTT-GACAAAGTTTTACGAGTTCTTTTAAAAC-TTCAGTTCCTTAAAGTA
* * * *
9378 TTCTTGACAATCCATTCCTTCAAACA
191 TTCATGACGATCC-TTCCTTCGAGCA
* * * *
9404 A-TTTTCTGAACATTCCATGCTCGGGAAAACACATCGTT-TGGTCTAAATAGTTTGTCATTTTGT
1 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTAT-GTCTAAATAGTTTGTCATTTTCT
* * * * * * * * *
9467 GAACAACTTATGATCTCTAAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTTTGTTCTTG
64 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTG
* ** * * * *
9532 GACAAAC-TTCTGAACTTGATGAAGTTTTGCAAGTTCTTTTAAAACTTCAATTCCTTAAAGAATT
129 GACGAACTTTC-GAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATT
*
9596 CATGACGATCCTTTCTTTCGAGCA
193 CATGACGATCC-TTCCTTCGAGCA
* * * * *
9620 ATTTTTCGAACATTCCAAGCACGGGGAATCGTATCA--ATGTCTAAATAGTTTGTCAATTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
* * ** *
9683 ACAACTTTTGGTCTATAAATTAAAAAGTTATTTACGTGAGAGTTGTTTAGCTCTTTGTTCTTGGA
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
* * * *
9748 CGAACTTCCGAACTTGACGAAGTTTCACGAGTTCTTTTAAAACTTCAGTTGCTTAAAGTATTCAT
131 CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
9813 GACGATCCTTCTCTTCGAGCA
196 GACGATCCTTC-CTTCGAGCA
* * * * *
9834 ATTCTCCGAACATTCCATGCGCGGGAAATCACATCATTTTGTCTAAATAGTTTGTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
** * * * *
9899 ACAACTTTTTATCTTTGAATTAAAAA-TCTATTTACGCGAGAGTTGTTTTTCTCCTT-GTTCTTA
66 ACAACTTTTGGTCTATGAATTAAAAACT-TATTTACGTGAGAGTTGTTTCTCT-CTTGGTTCTTG
* * * * * ** *
9962 GATGAACTTCCAAACTTGACAAACTTTTACGAGTTC-TTCAATAACTTTGGTTTCTTAAAGTATT
129 GACGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAA-AACTTCAGTTCCTTAAAGTATT
* * *
10026 CAGGACAATCCATTCCTTAGAGCA
193 CATGACGATCC-TTCCTTCGAGCA
* * *
10050 ATTTTTTGAACATTTCATGCTCGGGAAATCGCATCATT-TGGTCTAAATAGTTTGTCATTTTGTA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTAT-GTCTAAATAGTTTGTCATTTTCTA
* * * * * * *
10114 AACAATTTTTGGCCTATAAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTTGTTCCTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
** * * *
10179 ACGAACTACTT--AACTTGATGAAGTTTTGCAAGTTATTTTAAAACTTCAGTTCCTTAAAGTATT
130 ACGAACT--TTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATT
* *
10242 CTTGACAATCCATTCCTTCGAGCA
193 CATGACGATCC-TTCCTTCGAGCA
* * * * *
10266 AATTTTCGAACATTCCATGCGCTGGAAATCGTATCATTTTGTCTAAATAGTTTGTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
** * * * * * * *
10331 ACAACTTTTTATCTTTGAATCAAAAACCTATTTACGAGAGAGTAGTTTTTCTCTTGGTTCTTAGA
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
* * * * * * *
10396 TGAACTTCCAAACTTGACAAACTTTTACGAGTTC-TTCAATAACTTCGGTTTCTTAAAGTATTCA
131 CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAA-AACTTCAGTTCCTTAAAGTATTCA
* ** * *
10460 GGAAAATCCATTCCATAGAGCA
195 TGACGATCC-TTCCTTCGAGCA
* * * *
10482 ATTTTTTGATCATTCCATGCTCAGGAAATCGCATCATT-TGGTCTAAATAATTTGTCATTTTCTA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTAT-GTCTAAATAGTTTGTCATTTTCTA
* * * * * * * *
10546 AACTACTTTTGGTCTTTCACTGAAAAACTTATTAACGTGAGAGTTGTTTCTATCTTGGTTTTTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
* * *
10611 ACGAACTTTCGAACTT-AGCAAAATTTTACGAGTTCTTTTTATAACTT-ATGTTCCATAAAGTAT
130 ACGAACTTTCGAACTTGA-CAAAGTTTTACGAGTTC-TTTTAAAACTTCA-GTTCCTTAAAGTAT
*
10674 TCATGACGATCCATTCTTTCGAGCA
192 TCATGACGATCC-TTCCTTCGAGCA
* * * * * *
10699 ATTTTCCAAACATTTCATGCTTGGGAAATCGCATCATTTTTTCTAAACTA-----T--TTTTC--
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAA-TAGTTTGTCATTTTCTA
* * * * * * * *
10755 -ACAACTTTTGGTCTTTGAATGAAAAACTTATTTTCATGAGAATTGTTCCTCTCTTGGATATTGG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGG
* * * * * * * * * *
10819 ATGAAC-TTCTAAATTTGACAAACTTTGACGAGTTCTTCTATAACTTCGGTTCTTTAAAGTATTT
130 ACGAACTTTC-GAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTC
10883 ATGACGATCCATTCCTTCGAGCA
194 ATGACGATCC-TTCCTTCGAGCA
* * * *
10906 A-TTTTCTGAACATTCCATGCTTGGGAAATCACATCATTTTGTCTAAATAGTTTGTCATTTGT-G
1 ATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTT-TCT
* * * *
10969 ATACAACTTTTGGTC-ATTGAATTAAAAACTTATTTATGTGAGAATT-TATTAC-CTCTTGGATC
64 AAACAACTTTTGGTCTA-TGAATTAAAAACTTATTTACGTGAGAGTTGT-TT-CTCTCTTGGTTC
* * * * * * * ** *
11031 ATGGACAAACTTTCGAACGTCG-CAAACTTTTTACCAGTTATTTTATAACTTTGGTTCATTAAAG
126 TTGGACGAACTTTCGAAC-TTGACAAA-GTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAG
* *
11095 TATTCATGCCGATCCTTTACTTCGAGCA
189 TATTCATGACGATCC-TTCCTTCGAGCA
* * * * * *
11123 ATTTTCCAAACATTCCAAGCACGGGGAATCGCGTCATTATGTCTAAATAGTTTGTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
* * * *
11188 ACAACTTTTGGTCTATAAATTAAAAAGTTATTTACGTGAGTGTTGTTTCTCTCTTTGTTCTTGGA
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
* ** * *
11253 CGAACTTTCAAACTTGATGAAGTTTCACAAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
131 CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
11318 GACGATCCTTTCCTTCGAGCA
196 GACGATCC-TTCCTTCGAGCA
* * * * * *
11339 ATTTTTAGAACATTCCAAGCACGGGGAATCGCATCATTTTGTCTAAATAGTTTTTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
** * * *
11404 ACAACTTTTGGTCTACAAATTAAAAAGTTATTTATGTGAGAGTTGTTTCTCTCTTTGTTCTTGGA
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
* * * *
11469 CGAACTTCCGAGCTTGACAAAGTTTCACGAGTTCTTTTAAAACTTCAATTCCTTAAAGTATTCAT
131 CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
* *
11534 GATGATCCTTCCCTTCAAGCA
196 GACGATCCTT-CCTTCGAGCA
* * *
11555 ATTTTCCGAACATTCCAAT-CACGGGGAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTA
1 ATTTTTCGAACATTCC-ATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTA
* * *
11619 AACAACTTTTGGTCTTTGAATGAAAAACTTATTTACGTGAGAGTTGTTTTTTCTCTTGGTTCTTG
65 AACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTG-TTTCTCTCTTGGTTCTTG
* * * * **
11684 GACGAACTTTTGAACTTGGA-AAA-TTTTACCAGTT-TATCTATAACTTTTGTTCCTTAAAGTAT
129 GACGAACTTTCGAACTT-GACAAAGTTTTACGAGTTCT-TTTAAAACTTCAGTTCCTTAAAGTAT
* * *
11746 TCATGACAATCCATTCCTTCAAACA
192 TCATGACGATCC-TTCCTTCGAGCA
* ** * *
11771 ATTTTTCGAACATTCCATGCTCGGGAAAACAAATCGTT-TGGTCTAAATAGTTTGTCA-TTGCGT
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTAT-GTCTAAATAGTTTGTCATTTTC-T
* ** * * * * * *
11834 AAACAACTTATAATCTCTAAATTAAAATCTTATTTACTTGAGAATTGTTTCTCTCTTTGTTCTTG
64 AAACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTG
* ** * *
11899 GACGAACTTTTGAACTTGATGAAGTTTTGC-ATGTTCTTTTAAAACTTCAGTTCCTTAAAGAATT
129 GACGAACTTTCGAACTTGACAAAGTTTTACGA-GTTCTTTTAAAACTTCAGTTCCTTAAAGTATT
*
11963 CATGACGATCCTTTCTTTCGAGCA
193 CATGACGATCC-TTCCTTCGAGCA
* * * * * *
11987 ATTTTCCAAACATTCCAAGCACGGGGAATCGTATCATTATGTCTAAATAGTTTGTCATTTTCTAA
1 ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
* * *
12052 ACAACTTTTGGTCTATAAATTAAAAAGTTATTTACGTGATAGTTGTTTCT
66 ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCT
Statistics
Matches: 4377, Mismatches: 754, Indels: 302
0.81 0.14 0.06
Matches are distributed among these distances:
206 15 0.00
207 242 0.06
208 77 0.02
209 1 0.00
210 5 0.00
211 7 0.00
212 1 0.00
213 10 0.00
214 200 0.05
215 470 0.11
216 2450 0.56
217 862 0.20
218 37 0.01
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (215 bp):
ATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTATGTCTAAATAGTTTGTCATTTTCTAA
ACAACTTTTGGTCTATGAATTAAAAACTTATTTACGTGAGAGTTGTTTCTCTCTTGGTTCTTGGA
CGAACTTTCGAACTTGACAAAGTTTTACGAGTTCTTTTAAAACTTCAGTTCCTTAAAGTATTCAT
GACGATCCTTCCTTCGAGCA
Done.