Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000509.1 Kokia drynarioides strain JFW-HI SEQ_111389, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7940
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30


Found at i:6315 original size:17 final size:17

Alignment explanation


    Indices: 6293--6335  Score: 68
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       6283 CTATTAGTAA

                             
       6293 TCATTGTCATTACATTC
          1 TCATTGTCATTACATTC

                            *
       6310 TCATTGTCATTACATTT
          1 TCATTGTCATTACATTC

             *       
       6327 TAATTGTCA
          1 TCATTGTCA

       6336 CTGCATTTGC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.26, C:0.19, G:0.07, T:0.49


Consensus pattern (17 bp):   
TCATTGTCATTACATTC
Done.