genome.fa.s5092.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01005092.1 Kokia drynarioides strain JFW-HI SEQ_118910, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85203

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501--557	30	1.9	30	82	7	71	35	21	1	42	1.63
545--705	30	5.5	29	70	11	105	34	21	2	41	1.67
585--675	28	3.2	27	76	11	83	34	24	2	39	1.67
545--903	29	12.2	30	69	16	173	34	25	3	36	1.74
545--948	58	6.9	60	77	8	305	32	25	4	37	1.76
987--1046	28	2.1	28	84	6	77	31	30	8	30	1.87
6538--6606	17	4.1	16	73	21	52	75	4	17	2	1.09
7812--8101	50	5.8	49	72	14	191	41	20	24	13	1.88
7794--8110	150	2.1	150	92	0	526	41	20	24	14	1.89
7821--8390	138	4.0	138	85	4	647	41	20	23	15	1.90
8515--8713	101	2.0	101	87	2	292	35	16	18	30	1.92
8775--9064	39	7.4	39	69	10	189	26	30	18	24	1.98
8780--9064	78	3.7	78	86	0	383	25	30	18	24	1.98
8785--9080	156	1.9	156	86	2	425	26	29	19	24	1.99
9370--9846	206	2.3	206	87	1	661	35	18	23	22	1.96
9370--9903	206	2.6	206	85	1	640	35	19	23	22	1.96
10235--10329	16	5.7	16	73	11	66	34	5	6	53	1.49
10376--10465	26	3.5	25	88	7	135	35	32	14	17	1.90
11122--11162	21	2.0	21	100	0	82	48	0	0	51	1.00
12328--12579	29	8.6	29	68	14	117	34	25	3	36	1.72
13462--13489	2	14.0	2	100	0	56	50	0	0	50	1.00
14632--14711	40	2.0	40	83	11	101	32	23	1	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15761--15822	29	2.2	29	77	16	67	20	4	3	70	1.19
16737--16790	2	26.5	2	96	3	99	48	1	0	50	1.11
21136--21234	51	1.9	51	95	0	180	40	12	17	30	1.86
24291--24334	17	2.5	17	85	3	61	22	4	0	72	1.02
24952--25114	48	3.4	48	84	0	202	38	17	19	24	1.93
24994--25141	48	3.1	48	79	1	163	39	16	18	26	1.91
30726--30755	9	3.4	9	90	9	53	16	0	10	73	1.09
31460--31484	8	3.1	8	100	0	50	64	0	0	36	0.94
31690--31747	29	1.9	31	89	6	93	41	0	6	51	1.28
31701--31766	29	2.3	31	76	15	77	42	0	9	48	1.35
41138--41271	67	2.0	67	100	0	268	34	25	14	25	1.94
44618--44658	21	1.9	22	85	5	57	48	0	2	48	1.14
46302--46576	30	9.3	30	80	7	238	34	26	1	37	1.67
46383--46577	87	2.2	89	83	7	254	37	27	0	34	1.57
63435--63483	17	2.9	17	79	11	55	65	4	0	30	1.11
66710--66964	30	8.6	30	83	8	290	40	1	20	37	1.60
68600--69567	208	4.7	208	86	2	1221	25	21	15	37	1.93
69222--69388	85	2.0	85	85	2	228	25	25	14	35	1.93
68600--69566	415	2.3	415	84	3	1253	25	21	15	37	1.93
69620--70014	41	9.6	40	81	4	405	31	18	17	32	1.95
69623--70015	123	3.2	121	83	4	477	31	18	17	32	1.94
70272--70598	50	6.6	50	73	9	233	20	33	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71385--71466	7	13.5	6	72	23	57	2	17	1	79	0.91
71388--71471	29	2.9	30	83	15	90	3	16	1	78	0.95
71388--71471	28	2.9	30	81	15	97	3	16	1	78	0.95
71429--71466	20	1.9	20	89	10	60	2	18	0	78	0.86
72090--72130	20	2.0	21	86	13	59	4	14	2	78	1.03
76604--76783	30	6.2	30	81	10	160	37	1	22	38	1.62
76626--76783	30	5.4	28	81	11	165	39	0	21	37	1.58
76631--76784	59	2.6	60	83	7	208	38	0	22	38	1.59
77592--77624	17	2.0	17	88	5	50	9	9	6	75	1.18
83980--84013	16	2.2	15	94	5	59	32	0	0	67	0.91
84406--84438	2	16.5	2	93	0	57	45	0	3	51	1.16

Tables:   1

The End!