Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005095.1 Kokia drynarioides strain JFW-HI SEQ_118916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3979
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35


Found at i:804 original size:23 final size:21

Alignment explanation


    Indices: 763--821  Score: 64
    Period size: 23  Copynumber: 2.6  Consensus size: 21

        753 TTTTCATATA

                               *    
        763 TTTTAAATTTAGTATTTTTTTTAT
          1 TTTTAAATTTA--A-TTTTATTAT

                                   
        787 TTTTAGGAATTTAATTTTATTAT
          1 TTTTA--AATTTAATTTTATTAT

                        
        810 TTTTAAATTTAA
          1 TTTTAAATTTAA

        822 ATATATAAAT


Statistics
Matches: 32,  Mismatches: 1, Indels: 7
        0.80            0.03        0.17

Matches are distributed among these distances:
  21    7  0.22
  23   13  0.41
  24    6  0.19
  26    6  0.19

ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64


Consensus pattern (21 bp):   
TTTTAAATTTAATTTTATTAT
Done.