genome.fa.s511.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01000511.1 Kokia drynarioides strain JFW-HI SEQ_111394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  255935

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2479--2510	15	2.1	16	94	5	57	0	21	3	75	0.95
22269--22300	16	2.0	16	100	0	64	37	12	6	43	1.68
23158--23211	27	2.0	27	82	7	65	31	7	5	55	1.51
42084--42253	51	3.3	51	80	2	180	28	21	15	34	1.94
42503--42604	51	2.0	51	98	0	195	42	19	4	33	1.73
55184--55274	46	2.0	46	87	6	132	54	8	0	36	1.31
55236--55269	10	3.4	10	83	0	50	64	8	0	26	1.22
55191--55271	9	8.8	9	70	18	51	56	8	0	34	1.30
55191--55258	18	3.8	17	81	9	66	57	8	0	33	1.30
55159--55297	9	14.4	9	69	17	50	58	7	1	32	1.34
55582--55686	52	2.0	52	100	0	210	37	19	7	36	1.80
59671--59724	19	2.8	19	86	8	74	46	11	3	38	1.57
80752--80917	83	2.0	83	100	0	332	25	19	24	31	1.98
81510--81564	26	2.1	26	83	6	67	25	18	25	30	1.98
89640--89694	24	2.3	24	81	6	67	60	0	36	3	1.15
97068--97140	36	2.0	36	97	0	137	24	16	24	34	1.95
101432--101659	115	2.0	115	97	0	429	30	22	21	25	1.99
110675--110770	35	2.7	35	82	6	104	66	6	2	25	1.26
110708--110777	3	23.7	3	81	8	72	70	4	1	24	1.14
111016--111070	4	14.8	4	79	11	55	76	3	1	18	1.02
111024--111071	18	2.7	18	84	15	64	77	4	2	16	1.03
116597--116637	22	1.9	21	85	5	55	56	19	4	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118621--118682	20	3.1	20	85	0	88	32	8	11	48	1.68
119155--119229	37	2.0	37	84	5	98	49	9	6	34	1.61
121808--121846	20	2.0	20	90	10	62	43	7	10	38	1.67
127335--127382	19	2.5	20	75	21	50	45	0	0	54	0.99
127962--128003	19	2.3	19	84	12	52	33	2	2	61	1.21
128888--128921	12	2.8	12	90	0	50	41	14	26	17	1.88
133052--133077	12	2.2	12	100	0	52	42	7	34	15	1.75
133866--133973	40	2.7	39	76	9	119	34	27	12	25	1.92
137739--137830	26	3.5	26	77	10	98	28	19	21	30	1.98
144797--144868	35	2.1	35	89	0	108	27	15	30	26	1.96
148952--149087	67	2.0	67	82	8	166	53	4	2	39	1.33
157576--157620	18	2.5	18	79	13	56	13	8	11	66	1.44
167083--167126	21	2.1	21	87	8	63	50	2	2	45	1.27
167151--167223	29	2.5	28	82	10	85	54	1	5	38	1.32
173046--173120	21	3.5	22	77	15	79	22	29	17	30	1.97
176035--176118	38	2.2	38	91	0	132	38	23	14	23	1.92
180418--180602	43	4.4	42	78	6	169	35	11	26	25	1.91
180460--180628	42	4.1	41	76	12	116	38	10	26	25	1.87
180612--180666	27	2.0	27	96	0	101	40	3	21	34	1.71
184562--184661	21	4.8	21	94	0	164	33	24	17	26	1.96
184560--184678	42	2.8	42	87	2	141	32	24	15	27	1.95
185393--185581	52	3.6	52	83	3	175	34	22	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185393--185581	104	1.8	104	82	10	242	34	22	16	26	1.95
191834--191889	21	2.7	21	77	8	69	33	28	8	28	1.87
192044--192083	21	1.9	21	84	0	53	32	17	17	32	1.93
192607--192795	52	3.6	52	78	2	200	34	21	16	26	1.95
192560--192795	104	2.3	102	79	9	244	34	22	16	26	1.95
210145--210171	11	2.5	11	100	0	54	66	14	18	0	1.25
217900--217976	17	4.6	17	75	3	84	33	2	6	57	1.38
217900--217976	34	2.3	33	86	2	109	33	2	6	57	1.38
218608--218643	19	1.9	19	88	5	56	72	0	0	27	0.85
219674--219777	30	3.5	30	79	0	109	35	17	2	44	1.64
219675--219956	57	4.8	58	77	10	188	34	22	2	40	1.69
219737--219956	57	3.8	58	81	8	238	34	24	3	38	1.71
219732--219988	29	8.9	29	77	7	197	33	25	3	37	1.73
220283--220476	97	2.0	97	93	0	334	28	18	14	37	1.91
231739--232122	78	4.9	79	85	4	519	22	30	20	26	1.98
231741--232118	39	9.7	39	69	7	248	23	30	20	25	1.98
232536--232560	7	3.6	7	100	0	50	44	0	0	56	0.99
232544--232620	34	2.3	35	84	8	106	35	3	6	54	1.45
232544--232620	17	4.6	17	74	6	68	35	3	6	54	1.45
233556--233586	16	1.9	16	93	0	53	74	3	16	6	1.16
234320--234493	30	5.9	30	71	14	103	32	22	3	41	1.71
234437--234521	29	3.0	29	77	14	81	31	27	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234481--234666	29	6.5	27	76	9	156	32	25	4	37	1.75
234452--234637	57	3.2	58	79	8	193	32	26	4	37	1.76
234947--235132	97	1.9	97	87	2	275	30	18	11	38	1.87
240981--241030	26	1.9	26	95	0	91	18	34	22	26	1.96
243665--243713	13	3.8	12	79	12	53	40	14	2	42	1.57
243665--243719	26	2.1	26	86	6	76	38	16	3	41	1.66
243665--243729	13	5.0	13	75	7	51	40	16	6	36	1.74
244003--244134	60	2.2	60	80	8	151	48	12	14	24	1.79
250864--250910	17	2.8	17	78	18	53	78	12	0	8	0.95
250864--250898	18	1.9	17	88	11	52	77	14	0	8	0.99
250931--250985	28	2.0	27	86	13	76	54	21	3	20	1.59
254688--254712	2	12.5	2	100	0	50	52	0	0	48	1.00
255604--255823	99	2.2	99	93	0	368	24	21	26	28	1.99

Tables:   1

The End!