Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005112.1 Kokia drynarioides strain JFW-HI SEQ_118938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1870
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.39


Found at i:863 original size:22 final size:22

Alignment explanation


    Indices: 838--880  Score: 59
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        828 TCTCCTCTCG

                                  
        838 CTCAGATAAACTTAATTCTTCT
          1 CTCAGATAAACTTAATTCTTCT

                **        *      
        860 CTCATTTAAACTTATTTCTTC
          1 CTCAGATAAACTTAATTCTTC

        881 ATTTCTCCCA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.28, C:0.23, G:0.02, T:0.47


Consensus pattern (22 bp):   
CTCAGATAAACTTAATTCTTCT
Done.