Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005115.1 Kokia drynarioides strain JFW-HI SEQ_118941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.40


Found at i:454 original size:13 final size:12

Alignment explanation


    Indices: 438--476  Score: 53
    Period size: 13  Copynumber: 3.2  Consensus size: 12

        428 TATTCTTAAA

                         
        438 AAATATTTAGATT
          1 AAATATTTA-ATT

                         
        451 AAATATTTAATAT
          1 AAATATTTAAT-T

                        
        464 AAA-ATTTAATT
          1 AAATATTTAATT

              
        475 AA
          1 AA

        477 TAATTTTTAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 4
        0.86            0.00        0.14

Matches are distributed among these distances:
  11    3  0.12
  12    9  0.36
  13   13  0.52

ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44


Consensus pattern (12 bp):   
AAATATTTAATT

Found at i:658 original size:47 final size:47

Alignment explanation


    Indices: 576--667  Score: 132
    Period size: 47  Copynumber: 2.0  Consensus size: 47

        566 CATAATTGCA

                                      *   *         *      
        576 TTGAAATTTGACACATTCGTCTCATCTATTTTACTTCTAAGTGAGCT
          1 TTGAAATTTGACACATTCGTCTCATCAATTCTACTTCTAAATGAGCT

                                   *                      
        623 TTGAAATTTGACACACTT-GTCTTATCAATTCTACTTCTAAATGAG
          1 TTGAAATTTGACACA-TTCGTCTCATCAATTCTACTTCTAAATGAG

        668 TTGTTAATTA


Statistics
Matches: 40,  Mismatches: 4, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  47   38  0.95
  48    2  0.05

ACGTcount: A:0.28, C:0.18, G:0.12, T:0.41


Consensus pattern (47 bp):   
TTGAAATTTGACACATTCGTCTCATCAATTCTACTTCTAAATGAGCT
Done.