Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005118.1 Kokia drynarioides strain JFW-HI SEQ_118946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4428
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.30


Found at i:1444 original size:39 final size:39

Alignment explanation


    Indices: 1330--1444  Score: 151
    Period size: 39  Copynumber: 2.9  Consensus size: 39

       1320 CAGTATAGCT

                                   *                
       1330 TTGCAGTGTTTACAGTGTCACTGCCAGTTCAGA-ATATCA
          1 TTGCAGTGTTTACAGTGTCACTGTCAGTTCA-ATATATCA

                        *         *   *   **       
       1369 TTGCAGTGTTTAAAGTGTCACTATCAATTCGGTATATCA
          1 TTGCAGTGTTTACAGTGTCACTGTCAGTTCAATATATCA

                                     *           
       1408 TTGCAGTGTTTACAGTGTCACTGTCTGTTCAATATAT
          1 TTGCAGTGTTTACAGTGTCACTGTCAGTTCAATATAT

       1445 TTTTGACGTG


Statistics
Matches: 63,  Mismatches: 12, Indels: 2
        0.82            0.16        0.03

Matches are distributed among these distances:
  39   63  1.00

ACGTcount: A:0.25, C:0.17, G:0.19, T:0.38


Consensus pattern (39 bp):   
TTGCAGTGTTTACAGTGTCACTGTCAGTTCAATATATCA
Done.