Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005119.1 Kokia drynarioides strain JFW-HI SEQ_118947, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22432
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32


Found at i:169 original size:15 final size:15

Alignment explanation


    Indices: 149--189  Score: 64
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        139 AGTTGTGGTC

                           
        149 TCGAAACCATTATTT
          1 TCGAAACCATTATTT

                     *     
        164 TCGAAACCACTATTT
          1 TCGAAACCATTATTT

                *      
        179 TCGACACCATT
          1 TCGAAACCATT

        190 GAAATCGGGC


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.32, C:0.27, G:0.07, T:0.34


Consensus pattern (15 bp):   
TCGAAACCATTATTT

Found at i:10228 original size:22 final size:20

Alignment explanation


    Indices: 10203--10242  Score: 62
    Period size: 22  Copynumber: 1.9  Consensus size: 20

      10193 TTATGATTAA

                                  
      10203 CTTAATTAATCACTTATTTAGC
          1 CTTAATTAATC-C-TATTTAGC

                              
      10225 CTTAATTAATCCTATTTA
          1 CTTAATTAATCCTATTTA

      10243 TAATCAATAT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    6  0.33
  21    1  0.06
  22   11  0.61

ACGTcount: A:0.33, C:0.17, G:0.03, T:0.47


Consensus pattern (20 bp):   
CTTAATTAATCCTATTTAGC
Done.