Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000512.1 Kokia drynarioides strain JFW-HI SEQ_111395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 36632
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:34509 original size:18 final size:18

Alignment explanation


    Indices: 34486--34520  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

      34476 TAATAAGCAT

                               
      34486 AATCATAAGAAAA-TCGAA
          1 AATCATAA-AAAACTCGAA

                             
      34504 AATCATAAAAAACTCGA
          1 AATCATAAAAAACTCGA

      34521 CAGATCAAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    4  0.25
  18   12  0.75

ACGTcount: A:0.60, C:0.14, G:0.09, T:0.17


Consensus pattern (18 bp):   
AATCATAAAAAACTCGAA
Done.