Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005123.1 Kokia drynarioides strain JFW-HI SEQ_118954, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4633
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:2742 original size:21 final size:21

Alignment explanation


    Indices: 2701--2743  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2691 TTTGATAGCG

                       *  *      
       2701 TAGAATAATTACTTTGTTAAT
          1 TAGAATAATTAATTCGTTAAT

                                  
       2722 TAGAATAATTAAATTCG-TAAT
          1 TAGAATAATT-AATTCGTTAAT

             
       2743 T
          1 T

       2744 GTTTAATTCA


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   15  0.79
  22    4  0.21

ACGTcount: A:0.42, C:0.05, G:0.09, T:0.44


Consensus pattern (21 bp):   
TAGAATAATTAATTCGTTAAT
Done.