Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000513.1 Kokia drynarioides strain JFW-HI SEQ_111398, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1784
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39


Found at i:795 original size:36 final size:38

Alignment explanation


    Indices: 755--829  Score: 93
    Period size: 37  Copynumber: 2.0  Consensus size: 38

        745 ATGTCCGTAT

                                                   
        755 TTATACCT-AAATGTTT-TAGAATTTACAAAACA-TCCC
          1 TTATACCTCAAAT-TTTATAGAATTTACAAAACAGTCCC

                      *         **                
        791 TTATACCTCAGATTTTATAGTTTTTACAAAACAGTCCC
          1 TTATACCTCAAATTTTATAGAATTTACAAAACAGTCCC

             
        829 T
          1 T

        830 AAAATTCAAA


Statistics
Matches: 33,  Mismatches: 3, Indels: 4
        0.82            0.08        0.10

Matches are distributed among these distances:
  36   11  0.33
  37   17  0.52
  38    5  0.15

ACGTcount: A:0.35, C:0.20, G:0.07, T:0.39


Consensus pattern (38 bp):   
TTATACCTCAAATTTTATAGAATTTACAAAACAGTCCC
Done.