Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005131.1 Kokia drynarioides strain JFW-HI SEQ_118967, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1668
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34


Found at i:49 original size:14 final size:14

Alignment explanation


    Indices: 30--70  Score: 57
    Period size: 14  Copynumber: 2.9  Consensus size: 14

         20 TTTAGAGTCT

                          
         30 AAGGTTCAATGTTC
          1 AAGGTTCAATGTTC

                     *    
         44 AAGGTTCAAGGTTC
          1 AAGGTTCAATGTTC

                          
         58 -AGAGTTCAATGTT
          1 AAG-GTTCAATGTT

         71 TGAATTTTAG


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  13    2  0.08
  14   22  0.92

ACGTcount: A:0.29, C:0.12, G:0.24, T:0.34


Consensus pattern (14 bp):   
AAGGTTCAATGTTC
Done.