Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01005137.1 Kokia drynarioides strain JFW-HI SEQ_118975, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 903

Length: 1506
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33


Found at i:626 original size:20 final size:20

Alignment explanation


    Indices: 597--649  Score: 63
    Period size: 20  Copynumber: 2.7  Consensus size: 20

        587 ATGAAGTGTG

                                
        597 CCAA-CAGCATCAGGCAGCA
          1 CCAAGCAGCATCAGGCAGCA

              *            *    
        616 CCGAGCAGCATCAGGTAGCA
          1 CCAAGCAGCATCAGGCAGCA

            *      *      
        636 TCAAGCAACATCAG
          1 CCAAGCAGCATCAG

        650 CAATAGTTGG


Statistics
Matches: 28,  Mismatches: 5, Indels: 1
        0.82            0.15        0.03

Matches are distributed among these distances:
  19    3  0.11
  20   25  0.89

ACGTcount: A:0.36, C:0.32, G:0.23, T:0.09


Consensus pattern (20 bp):   
CCAAGCAGCATCAGGCAGCA
Done.